DR Mohsen Kazemi

DR Mohsen Kazemi

Positions

  • Biomedical Imaging and Image Processing (Single Particle Analysis (SPA), Sub-tomogram Averaging (STA), Machine Learning, Software Development)
  • Biomedical Instrumentation
  • Computational Biology (Cryo-Electron Microscopy, Cryo-Electron Tomography)

Overview

OverviewText1

  • After finishing the PhD in 2014 at UTM (Malaysia) in the field of Biomedical Engineering, I started my Postdoc in Instruct Image Processing Centre (I2PC) at the National Centre for Biotechnology (Madrid-SP). This lab has being developed the well-known XMIPP software suite, together with other advanced tools as part of the European Strategic Infrastructure on Structural Biology. There, I had been involved in the development and implementation of image processing methods for Single Particle Analysis (cryo-EM) and Soft X-ray Tomography for open source software Xmipp, Scipion and Scipion Web-tools. In 2018, I moved to the Rouiller's lab located at the Bio21 Institute (The University of Melbourne). This is a structural biology lab and we use cryo-EM to determine the 3D structure of macromolecular protein complexes, including ATPases, bacterial transporters, and ion channels. We use cryo-ET to determine the 3D structure of viral proteins. Here my focus is on the development of image processing methods related to the Single Particle Analysis (SPA) and Sub-tomogram Averaging (STA).   

Publications

Selected publications

Research

Additional Grant Information

  • - Development of an embedded system for portable monitoring of asthma severity, UTM-PDRU_65,000.00 MYR (~ $21,500) excluded my salary, February 9th, 2014 to February 8th, 2015 - Development of portable asthma severity monitoring tool for home environment, UTM-RUG (Tier 1)_55,000.00 MYR (~ $18,000) excluded my salary, April 1st, 2014 to March 31st, 2016    

Awards

Education and training

  • Postdoc, Spanish National Research Council 2017
  • PhD, University of Technology Malaysia 2014

Awards and honors

  • Bio21 Institute Research Fellow Travel Award, Bio21 Institute, 2018
  • Professional Engineer, Engineers Australia, 2016
  • Gold Medal, The 16th Industrial Art and Technology Exhibition (INATEX), 2014
  • Best Student Award (Doctor of Philosophy), University Technology Malaysia, 2014
  • University Technology Malaysia, 2013
  • Silver Medal, The 24th International Invention, Innovation and Technology Exhibition (ITEX), 2013
  • Silver Medal, BioInnovation Awards, 2013
  • Silver Medal, The 15th Industrial Art and Technology Exhibition (INATEX), 2013

Supervision

Available for supervision

  • Y

Supervision Statement

  • Research interests: Single Particle Analysis (cryo-EM), Subtomogram Averaging (cryo-ET), Biomedical Imaging and Image Processing, Machine Learning