Subject area for
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Faculty Member
- DR Christophe Lefevre
- DR Joseph Cursons Faculty Member
- DR Kim-Anh Le Cao
- PROF Justin Zobel Faculty Member
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Computer Software Products
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Conference Papers Refereed
- A Distributed Clinical Data Platform for Physiological Studies in the Brain Trauma Domain
- A mobile application and cloud platform supporting research into alcohol consumption
- A systematic mechanism for the ethical collection and interpretation of display format pathology test results from Australian Primary Care records
- An Evolutionary Approach for fMRI Big Data Classification
- Automatic optical and IR image fusion for plant water stress analysis
- Automatic scoring of erythema and scaling severity in psoriasis diagnosis
- BioGrid Australia and GRHANITE™ Privacy-Protecting Subject Matching
- Detection of protein catalytic sites in the biomedical literature
- Early Warning of EUSIG Defined Hypotensive Events Using a Bayesian Artificial Neural Network
- Early Warning of EUSIG-Defined Hypotensive Events Using a Bayesian Artificial Neural Network
- Evaluation of coreference resolution for biomedical text
- Extracting structured information from free-text medication prescriptions using dependencies
- Information Extraction from Medication Prescriptions Within Drug Administration Data
- Monitoring glaucomatous progression: classification of visual field measurements using stable reference data
- Security-oriented Workflows for the Social Sciences
- Supercomputing enabling exhaustive statistical analysis of genome wide association study data: Preliminary results
- Trigger Characteristics of EUSIG-Defined Hypotensive Events
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Contract
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Grant
- AUSTRALASIAN DIABETES DATA NETWORK
- CENTRE OF RESEARCH EXCELLENCE FOR THE PROTECTION OF PANCREATIC BETA CELLS
- HIGH RESOLUTION ANALYSIS OF VIRAL METAGENOMES FOR CLINICAL AND ECOLOGICAL STUDIES
- HOWARD HUGHES MEDICAL INSTITUTE-GATES INTERNATIONAL SCHOLAR: MICROBIAL GENOMICS
- SMART ALGORITHMS FOR VISUAL FIELD ASSESSMENT
- Translational Biomedical Research Platforms Travel Grant
- Understanding the Molecular Mechanisms of complex Mutations
- WHAT PREDICTS THE PROGRESSIVE PHASE OF MULTIPLE SCLEROSIS
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Journal Articles Refereed
- "Fitspiration" on Social Media: A Content Analysis of Gendered Images
- γH2AX foci as a measure of DNA damage: a computational approach to automatic analysis
- A UIMA wrapper for the NCBO annotator
- A comparison of background correction methods for two-colour microarrays
- A high-plex PCR approach for massively parallel sequencing
- A large-scale evaluation of computational protein function prediction
- A rapid scoring tool to assess mutation probability in patients with inherited cardiac disorders
- A semantic web ontology for small molecules and their biological targets
- A simple consensus approach improves somatic mutation prediction accuracy
- A statistical framework for analyzing deep mutational scanning data
- A systematic mechanism for the ethical collection and interpretation of display format pathology test results from Australian Primary Care records
- Acquisition and Evaluation of Verb Subcategorization Resources for Biomedicine
- An interactive web-based application for Comprehensive Analysis of RNAi-screen Data
- Analysis and management of HIV peptide microarray experiments
- Annokey: an annotation tool based on key term search of the NCBI Entrez Gene database
- Approaches to Verb Subcategorization for Biomedicine
- Approximate Subgraph Matching-Based Literature Mining for Biomedical Events and Relations
- Astronomical algorithms for automated analysis of tissue protein expression in breast cancer
- Australasian diabetes data network: Building a collaborative resource
- Automatic Segmentation of Scaling in 2-D Psoriasis Skin Images
- BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods
- Beyond a Disease Registry: An Integrated Virtual Environment for Adrenal Cancer Research
- Big data in medicine is driving big changes
- Biochemical diagnosis of phaeochromocytoma using plasma-free normetanephrine, metanephrine and methoxytyramine: importance of supine sampling under fasting conditions
- Bioinformatics Pipelines for Targeted Resequencing and Whole-Exome Sequencing of Human and Mouse Genomes: A Virtual Appliance Approach for Instant Deployment
- Bpipe: a tool for running and managing bioinformatics pipelines
- Breast Cancer Risk Prediction Using Clinical Models and 77 Independent Risk-Associated SNPs for Women Aged Under 50 Years: Australian Breast Cancer Family Registry
- CLOVE: classification of genomic fusions into structural variation events
- CONTRA: copy number analysis for targeted resequencing
- Canary: an atomic pipeline for clinical amplicon assays
- Classification and evaluation strategies of auto-segmentation approaches for PET: Report of AAPM task group No. 211
- Colorectal cancer atlas: An integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tissues
- Combining heterogeneous data sources for accurate functional annotation of proteins
- Community-driven development for computational biology at Sprints, Hackathons and Codefests
- Comparison of classical multi-locus sequence typing software for next-generation sequencing data.
- Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
- Designing new methodologies for integrating biomedical information in clinical trials
- Discovery and analysis of consistent active subnetworks in cancers
- Distributed gene expression modelling for exploring variability in epigenetic function
- Divergent lymphocyte signalling revealed by a powerful new tool for analysis of time-lapse microscopy
- Estimating TP53 mutation carrier probability in families with li-fraumeni syndrome using LFSPRO
- FunRich: An open access standalone functional enrichment and interaction network analysis tool
- GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly
- Genome Assembly Framework on Massively Parallel, Distributed Memory Supercomputers
- Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud
- Harmonizing FDG PET quantification while maintaining optimal lesion detection: prospective multicentre validation in 517 oncology patients
- Hi-Plex for high-throughput mutation screening: application to the breast cancer susceptibility gene PALB2
- Hierarchical bond graph modelling of biochemical networks
- INsPeCT: INtegrative Platform for Cancer Transcriptomics
- Large-scale biomedical concept recognition: An evaluation of current automatic annotators and their parameters
- Literature mining of genetic variants for curation: quantifying the importance of supplementary material
- Mapping the stabilome: A novel computational method for classifying metabolic protein stability
- MethPat: a tool for the analysis and visualisation of complex methylation patterns obtained by massively parallel sequencing
- Microarray background correction: maximum likelihood estimation for the normal-exponential convolution
- Monogenic diabetes syndromes: Locus-specific databases for Alstrom, Wolfram, and Thiamine-responsive megaloblastic anemia
- Mutation extraction tools can be combined for robust recognition of genetic variants in the literature
- Normalized Polarization Ratios for the Analysis of Cell Polarity
- Novel associations in disorders of sex development: findings from the I-DSD Registry
- Ontology quality assurance through analysis of term transformations
- PathOS: a decision support system for reporting high throughput sequencing of cancers in clinical diagnostic laboratories
- Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes
- Proposal for a standardised reporting guideline to annotate health-related self-quantification experiments
- ROVER variant caller: read-pair overlap considerate variant-calling software applied to PCR-based massively parallel sequencing datasets
- Reliability and usability of an internet-based computerized cognitive testing battery in community-dwelling older people
- Rewiring the dynamic interactome
- SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
- STatistically Assigned Response Criteria in Solid Tumors (STARCIST)
- Short Read Sequence Typing (SRST): multi-locus sequence types from short reads
- Simultaneous segmentation and anatomical labeling of the cerebral vasculature
- SparSNP: Fast and memory-efficient analysis of all SNPs for phenotype prediction
- Structure-Based Reassessment of the Caveolin Signaling Model: Do Caveolae Regulate Signaling through Caveolin-Protein Interactions?
- The Ark: a customizable web-based data management tool for health and medical research
- The European disorder of sex development registry: A virtual research environment
- The textual characteristics of traditional and Open Access scientific journals are similar
- Tools to analyse and display variations in anatomical delineation
- Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens
- Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks
- Understanding the Relationship between Interactive Optimisation and Visual Analytics in the Context of Prostate Brachytherapy
- Uptake of telehealth implementation for COPD patients in a high-poverty, inner-city environment: A survey
- Validation of JCountPro software for efficient assessment of ionizing radiation-induced foci in human lymphocytes
- Visualising associations between paired 'omics' data sets
- e-Infratructures Supporting Research into Depression, Self-Harm and Suicide
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Journal Articles Unrefereed
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Journal Articles Unrefereed Letters Or Notes
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Other Refereed Contribution To Refereed Journals
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Research Book Chapters