Bioinformatics Software
FOR 2008 6 digit Code
Overview
Subject area for
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Faculty Member
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Computer Software Products
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Conference Papers Refereed
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Contract
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Grant
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Journal Articles Refereed
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"Fitspiration" on Social Media: A Content Analysis of Gendered Images
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γH2AX foci as a measure of DNA damage: a computational approach to automatic analysis
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A UIMA wrapper for the NCBO annotator
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A comparison of background correction methods for two-colour microarrays
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A high-plex PCR approach for massively parallel sequencing
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A large-scale evaluation of computational protein function prediction
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A rapid scoring tool to assess mutation probability in patients with inherited cardiac disorders
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A semantic web ontology for small molecules and their biological targets
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A simple consensus approach improves somatic mutation prediction accuracy
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A statistical framework for analyzing deep mutational scanning data
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A systematic mechanism for the ethical collection and interpretation of display format pathology test results from Australian Primary Care records
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Acquisition and Evaluation of Verb Subcategorization Resources for Biomedicine
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An interactive web-based application for Comprehensive Analysis of RNAi-screen Data
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An open-source, integrated pedigree data management and visualization tool for genetic epidemiology.
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Analysis and management of HIV peptide microarray experiments
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Annokey: an annotation tool based on key term search of the NCBI Entrez Gene database
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Approaches to Verb Subcategorization for Biomedicine
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Approximate Subgraph Matching-Based Literature Mining for Biomedical Events and Relations
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Astronomical algorithms for automated analysis of tissue protein expression in breast cancer
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Australasian diabetes data network: Building a collaborative resource
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Automatic Segmentation of Scaling in 2-D Psoriasis Skin Images
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BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods
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Beyond a Disease Registry: An Integrated Virtual Environment for Adrenal Cancer Research
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Big data in medicine is driving big changes
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Biochemical diagnosis of phaeochromocytoma using plasma-free normetanephrine, metanephrine and methoxytyramine: importance of supine sampling under fasting conditions
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Bioinformatics Pipelines for Targeted Resequencing and Whole-Exome Sequencing of Human and Mouse Genomes: A Virtual Appliance Approach for Instant Deployment
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Bpipe: a tool for running and managing bioinformatics pipelines
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Breast Cancer Risk Prediction Using Clinical Models and 77 Independent Risk-Associated SNPs for Women Aged Under 50 Years: Australian Breast Cancer Family Registry
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CLOVE: classification of genomic fusions into structural variation events
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CONTRA: copy number analysis for targeted resequencing
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Canary: an atomic pipeline for clinical amplicon assays
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Classification and evaluation strategies of auto-segmentation approaches for PET: Report of AAPM task group No. 211
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Colorectal cancer atlas: An integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tissues
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Combining heterogeneous data sources for accurate functional annotation of proteins
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Community-driven development for computational biology at Sprints, Hackathons and Codefests
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Comparison of classical multi-locus sequence typing software for next-generation sequencing data
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Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
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Designing new methodologies for integrating biomedical information in clinical trials
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Discovery and analysis of consistent active subnetworks in cancers
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Distributed gene expression modelling for exploring variability in epigenetic function
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Divergent lymphocyte signalling revealed by a powerful new tool for analysis of time-lapse microscopy
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Estimating TP53 mutation carrier probability in families with li-fraumeni syndrome using LFSPRO
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FunRich: An open access standalone functional enrichment and interaction network analysis tool
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GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly
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Genome Assembly Framework on Massively Parallel, Distributed Memory Supercomputers
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Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud
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Harmonizing FDG PET quantification while maintaining optimal lesion detection: prospective multicentre validation in 517 oncology patients
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Hi-Plex for high-throughput mutation screening: application to the breast cancer susceptibility gene PALB2
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Hierarchical bond graph modelling of biochemical networks
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INsPeCT: INtegrative Platform for Cancer Transcriptomics
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Large-scale biomedical concept recognition: An evaluation of current automatic annotators and their parameters
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Literature mining of genetic variants for curation: quantifying the importance of supplementary material
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Mapping the stabilome: A novel computational method for classifying metabolic protein stability
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MethPat: a tool for the analysis and visualisation of complex methylation patterns obtained by massively parallel sequencing
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Microarray background correction: maximum likelihood estimation for the normal-exponential convolution
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Monogenic diabetes syndromes: Locus-specific databases for Alstrom, Wolfram, and Thiamine-responsive megaloblastic anemia
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Mutation extraction tools can be combined for robust recognition of genetic variants in the literature
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Normalized Polarization Ratios for the Analysis of Cell Polarity
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Novel associations in disorders of sex development: findings from the I-DSD Registry
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Ontology quality assurance through analysis of term transformations
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PathOS: a decision support system for reporting high throughput sequencing of cancers in clinical diagnostic laboratories
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Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes
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Proposal for a standardised reporting guideline to annotate health-related self-quantification experiments
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ROVER variant caller: read-pair overlap considerate variant-calling software applied to PCR-based massively parallel sequencing datasets
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Reliability and usability of an internet-based computerized cognitive testing battery in community-dwelling older people
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Rewiring the dynamic interactome
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SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
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STatistically Assigned Response Criteria in Solid Tumors (STARCIST)
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Short Read Sequence Typing (SRST): multi-locus sequence types from short reads
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Simultaneous segmentation and anatomical labeling of the cerebral vasculature
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SparSNP: Fast and memory-efficient analysis of all SNPs for phenotype prediction
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Structure-Based Reassessment of the Caveolin Signaling Model: Do Caveolae Regulate Signaling through Caveolin-Protein Interactions?
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The Ark: a customizable web-based data management tool for health and medical research
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The European disorder of sex development registry: A virtual research environment
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The textual characteristics of traditional and Open Access scientific journals are similar
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Tools to analyse and display variations in anatomical delineation
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Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens
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Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks
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Understanding the Relationship between Interactive Optimisation and Visual Analytics in the Context of Prostate Brachytherapy
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Uptake of telehealth implementation for COPD patients in a high-poverty, inner-city environment: A survey
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Validation of JCountPro software for efficient assessment of ionizing radiation-induced foci in human lymphocytes
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Visualising associations between paired 'omics' data sets
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e-Infratructures Supporting Research into Depression, Self-Harm and Suicide
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Journal Articles Unrefereed
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Journal Articles Unrefereed Letters Or Notes
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Other Refereed Contribution To Refereed Journals
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Research Book Chapters
Broader term