Benjamin Goudey

Pan-Family Assays for Rapid Viral Screening: Reducing Delays in Public Health Responses During Pandemics.

Michael Erlichster, Gursharan Chana, Daniela Zantomio, Benjamin Goudey, Efstratios Skafidas

Journal article  |  2021  |  Clin Infect Dis

BACKGROUND: Coronavirus disease 2019 has highlighted deficiencies in the testing capacity of many developed countries during the e..

eQTLHap: a tool for comprehensive eQTL analysis considering haplotypic and genotypic effects.

Ziad Al Bkhetan, Gursharan Chana, Cheng Soon Ong, Benjamin Goudey, Kotagiri Ramamohanarao

Journal article  |  2021  |  Brief Bioinform

MOTIVATION: The high accuracy of recent haplotype phasing tools is enabling the integration of haplotype (or phase) information mo..

A MultiCenter Analysis of Factors Associated with Hearing Outcome for 2,735 Adults with Cochlear Implants

Benjamin Goudey, Kerrie Plant, Isabell Kiral, Antonio Jimeno-Yepes, Annalisa Swan, Manoj Gambhir, Andreas Buechner, Eugen Kludt, Robert H Eikelboom, Cathy Sucher, Rene H Gifford, Riaan Rottier, Hamideh Anjomshoa

Journal article  |  2021  |  TRENDS IN HEARING

While the majority of cochlear implant recipients benefit from the device, it remains difficult to estimate the degree of benefit ..

Evaluation of consensus strategies for haplotype phasing

Ziad Al Bkhetan, Gursharan Chana, Kotagiri Ramamohanarao, Karin Verspoor, Benjamin Goudey

Journal article  |  2021  |  BRIEFINGS IN BIOINFORMATICS

Haplotype phasing is a critical step for many genetic applications but incorrect estimates of phase can negatively impact downstre..

Collateral Sensitivity to beta-Lactam Drugs in Drug-Resistant Tuberculosis Is Driven by the Transcriptional Wiring of BlaI Operon Genes

AS Trigos, BW Goudey, J Bedo, TC Conway, NG Faux, KL Wyres

Journal article  |  2021  |  MSPHERE

The evolution of resistance to one antimicrobial can result in enhanced sensitivity to another, known as "collateral sensitivity."..

Letter: improved parsimony of genetic risk scores for coeliac disease through refined HLA modelling

Michael Erlichster, Justin Bedo, Efstratios Skafidas, Patrick Kwan, Adam Kowalczyk, Benjamin Goudey

Journal article  |  2021  |  ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Improved HLA-based prediction of coeliac disease identifies two novel genetic interactions

Michael Erlichster, Justin Bedo, Efstratios Skafidas, Patrick Kwan, Adam Kowalczyk, Benjamin Goudey

Journal article  |  2020  |  European Journal of Human Genetics

Human Leucocyte Antigen (HLA) testing is useful in the clinical work-up of coeliac disease (CD) with high negative but low positiv..

Evaluation of consensus strategies for haplotype phasing

Ziad Al Bkhetan, Gursharan Chana, Kotagiri Ramamohanarao, Karin Verspoor, Benjamin Goudey

Journal article  |  2020

Motivation Haplotype phasing is a critical step for many genetic applications but incorrect estimates of phase can negatively impa..

Utility of Pan-Family Assays for Rapid Viral Screening: Reducing Delays in Public Health Responses During Pandemics

Michael Erlichster, Gursharan Chana, Daniela Zantomio, Benjamin Goudey, Efstratios Skafidas

Journal article  |  2020

Summary Background The SARS-CoV-2 pandemic has highlighted deficiencies in the testing capacity of many developed countries during..

Exploring effective approaches for haplotype block phasing

Ziad Al Bkhetan, Justin Zobel, Adam Kowalczyk, Karin Verspoor, Benjamin Goudey

Journal article  |  2019  |  BMC BIOINFORMATICS

BACKGROUND: Knowledge of phase, the specific allele sequence on each copy of homologous chromosomes, is increasingly recognized as..