Matthew Wakefield Wakefield

Therapeutic options for mucinous ovarian carcinoma.

Kylie L Gorringe, Dane Cheasley, Matthew J Wakefield, Georgina L Ryland, Prue E Allan, Kathryn Alsop, Kaushalya C Amarasinghe, Sumitra Ananda, David DL Bowtell, Michael Christie, Yoke-Eng Chiew, Michael Churchman, Anna DeFazio, Sian Fereday, C Blake Gilks, Charlie Gourley, Alison M Hadley, Joy Hendley, Sally M Hunter, Scott H Kaufmann, et al.

Journal article  |  2020  |  Gynecologic Oncology

OBJECTIVE: Mucinous ovarian carcinoma (MOC) is an uncommon ovarian cancer histotype that responds poorly to conventional chemother..

PyLazyBam - A pure python lazy BAM parser

Matthew Wakefield

Software / Code  |  2020

Pylazybam is a pure python library for reading minimal amounts of information from a BAM format mapped sequence alignment file. It..

Diverse mechanisms of PARP inhibitor resistance in ovarian cancer

Matthew John Wakefield, Ksenija Nesic, Olga Kondrashova, Clare L Scott

Journal article  |  2019  |  Biochimica et Biophysica Acta (BBA) - Reviews on Cancer

The molecular origin and taxonomy of mucinous ovarian carcinoma

Dane Cheasley, Matthew J Wakefield, Georgina L Ryland, Prue E Allan, Kathryn Alsop, Kaushalya C Amarasinghe, Sumitra Ananda, Michael S Anglesio, George Au-Yeung, Maret Bohm, David Dl Bowtell, Alison Brand, Georgia Chenevix-Trench, Michael Christie, Yoke-Eng Chiew, Michael Churchman, Anna DeFazio, Renee Demeo, Rhiannon Dudley, Nicole Fairweather, et al.

Journal article  |  2019  |  Nature Communications

MUCINOUS OVARIAN CARCINOMA: THERAPEUTIC OPTIONS OLD AND NEW

K Gorringe, D Cheasley, M Wakefield, I Campbell, Y Antill, C Scott

Conference Proceedings  |  2019  |  Plenary sessions

FokI-dCas9 mediates high-fidelity genome editing in pigs

Nella Fisicaro, Evelyn J Salvaris, Gayle K Philip, Matthew J Wakefield, Mark B Nottle, Wayne J Hawthorne, Peter Cowan

Conference Proceedings  |  2019  |  XENOTRANSPLANTATION

FokI-dCas9 mediates high-fidelity genome editing in pigs

Nella Fisicaro, Evelyn J Salvaris, Gayle K Philip, Matthew J Wakefield, Mark B Nottle, Wayne J Hawthorne, Peter J Cowan

Journal article  |  2019  |  Xenotransplantation

Two of a kind: transmissible Schwann cell cancers in the endangered Tasmanian devil (Sarcophilus harrisii).

Amanda L Patchett, Tim HH Coorens, Jocelyn Darby, Richard Wilson, Matthew J McKay, Karthik S Kamath, Alan Rubin, Matthew Wakefield, Lachlan Mcintosh, Stefano Mangiola, Ruth J Pye, Andrew S Flies, Lynn M Corcoran, A Bruce Lyons, Gregory M Woods, Elizabeth P Murchison, Anthony T Papenfuss, Cesar Tovar

Journal article  |  2019  |  Cellular and Molecular Life Sciences

Devil facial tumour disease (DFTD) comprises two genetically distinct transmissible cancers (DFT1 and DFT2) endangering the surviv..

Clinical Utility of Real-Time Targeted Molecular Profiling in the Clinical Management of Ovarian Cancer: The ALLOCATE Study

Olga Kondrashova, Gwo-Yaw Ho, George Au-Yeung, Leakhena Leas, Tiffany Boughtwood, Kathryn Alsop, Giada Zapparoli, Alexander Dobrovic, Yi-An Ko, Arthur L Hsu, Clare J Love, Sebastian Lunke, Matthew J Wakefield, Orla McNally, Michael Quinn, Sumitra Ananda, Deborah Neesham, Anne Hamilton, Marisa Grossi, Alison Freimund, et al.

Journal article  |  2019  |  JCO Precision Oncology

Inhibition of RNA Polymerase I Transcription Activates Targeted DNA Damage Response and Enhances the Efficacy of PARP Inhibitors in High-Grade Serous Ovarian Cancer

Elaine Sanij, Katherine Hannan, Shunfei Yan, Jiachen Xuan, Jessica Ahern, Keefe Chan, Jinbae Son, Olga Kondrashova, Elizabeth Lieschke, Matthew Wakefield, Anna Trigos, Daniel Frank, Sarah Ellis, Carleen Cullinane, Jian Kang, Gretchen Poortinga, Purba Nag, Kum Kum Khanna, Linda Mileshkin, Grant McArthur, et al.

Journal article  |  2019

Abstract High-grade serous ovarian cancer (HGSOC) accounts for the majority of ovarian cancer and has a dismal prognosis. PARP inh..

RNA-seq of Isolated Chromaffin Cells Highlights the Role of Sex-Linked and Imprinted Genes in Adrenal Medulla Development

Wing Hei Chan, Masayuki Komada, Toshiaki Fukushima, E Michelle Southard-Smith, Colin R Anderson, Matthew J Wakefield

Journal article  |  2019  |  Scientific Reports

SRA737, a novel Chk1 inhibitor, shows efficacy in CCNE1-amplified and MYCN-overexpressing high-grade serous ovarian cancer patient-derived xenograft models

GY Ho, H Barker, C Vanderberg, O Kondrashova, E Kyran, E Lieschke, O McNally, A Hamilton, V Heong, R Hansen, S Milutinovic, B Strouse, M Hedrick, C Hassig, D Bowtell, W Matthew, C Scott

Conference Proceedings  |  2018  |  EUROPEAN JOURNAL OF CANCER

Methylation of all BRCA1 copies predicts response to the PARP inhibitor rucaparib in ovarian carcinoma

Olga Kondrashova, Monique Topp, Ksenija Nesic, Elizabeth Lieschke, Gwo-Yaw Ho, Maria Harrell, Giada Zapparoli, Alison Hadley, Robert Holian, Emma Boehm, Valerie Heong, Elaine Sanij, Richard B Pearson, John J Krais, Neil Johnson, Orla McNally, Sumitra Ananda, Kathryn Alsop, Karla J Hutt, Scott H Kaufmann, et al.

Journal article  |  2018  |  Nature Communications

TARGETING MYCN OVER-EXPRESSION WITH BRD4 INHIBITION IN THE PROLIFERATIVE C5 SUBTYPE OF HIGH GRADE SEROUS OVARIAN CANCER (HGSOC)

GY Ho, O Kondrashova, C Vandenberg, E Kyran, E Lieschke, V Heong, M Milevskiy, T Papenfuss, J Schroeder, J Weroha, M Dawson, D Bowtell, H Barker, M Wakefield, C Scott

Conference Proceedings  |  2018  |  INTERNATIONAL JOURNAL OF GYNECOLOGICAL CANCER

Australian Ovarian Cancer Assortment Trial-Allocating ovarian cancer patients into clinical trials based on molecular profiling.

Olga Kondrashova, George Au-Yeung, Leakhena Leas, Gwo-Yaw Ho, Sebastian Lunke, Kathryn Alsop, Clare Scott, Anne Hamilton, Sumitra Ananda, Alison Freimund, Michael Quinn, Orla McNally, Nadia Traficante, Tiffany Cowie, Matthew Wakefield, Arthur Hsu, Alex Dobrovic, Michael Christie, Graham Taylor, David Bowtell, et al.

Conference Proceedings  |  2018  |  CLINICAL CANCER RESEARCH

DNA repair processes are critical mediators of p53-dependent tumor suppression

Ana Janic, Liz J Valente, Matthew J Wakefield, Leon Di Stefano, Liz Milla, Stephen Wilcox, Haoyu Yang, Lin Tai, Cassandra J Vandenberg, Andrew J Kueh, Shinsuke Mizutani, Margs S Brennan, Robyn L Schenk, Lisa M Lindqvist, Anthony T Papenfuss, Liam O'Connor, Andreas Strasser, Marco J Herold

Journal article  |  2018  |  Nature Medicine

Loss of RAD51C promoter hypermethylation confers PARP inhibitor resistance

Rachel M Hurley, Ksenija Nesic, Cordelia McGehee, Olga Kondrashova, Maria I Harrell, Paula A Schneider, Xiaonan Hou, Cristina Correia, Karen S Flatten, Giada V Zapparoli, Alexander Dobrovic, Kevin K Lin, Thomas C Harding, Andrea E Wahner Hendrickson, Elizabeth M Swisher, Matthew Wakefield, S John Weroha, Clare L Scott, Scott H Kaufmann

Conference Proceedings  |  2018  |  Experimental and Molecular Therapeutics

Targeting DNA repair: the genome as a potential biomarker

Ksenija Nesic, Matthew Wakefield, Olga Kondrashova, Clare L Scott, Iain A McNeish

Journal article  |  2018  |  The Journal of Pathology

Secondary Somatic Mutations Restoring RAD51C and RAD51D Associated with Acquired Resistance to the PARP Inhibitor Rucaparib in High-Grade Ovarian Carcinoma

Olga Kondrashova, Minh Nguyen, Kristy Shield-Artin, Anna V Tinker, Nelson NH Teng, Maria I Harrell, Michael J Kuiper, Gwo-Yaw Ho, Holly Barker, Maria Jasin, Rohit Prakash, Elizabeth M Kass, Meghan R Sullivan, Gregory J Brunette, Kara A Bernstein, Robert L Coleman, Anne Floquet, Michael Friedlander, Ganessan Kichenadasse, David M O'Malley, et al.

Journal article  |  2017  |  Cancer Discovery

Hedgehog inhibition impaired platinum response in high-grade serous ovarian cancer harboring high hedgehog ligand expression and mTOR pathway activation.

Gwo Yaw Ho, Elizabeth Lieschke, Elizabeth Kyran, Kristy Shield-Artin, Olga Kondrashova, Holly Barker, Robert Hollian, Aurelie Cazet, Phuong Thuan, Alex Swarbrick, Orla McNally, David Bowtell, Matthew Wakefield, Clare L Scott

Conference Proceedings  |  2017  |  Journal of Clinical Oncology

SurvivalVolume: interactive volume threshold survival graphs

Matthew J. Wakefield

Journal article  |  2016  |  The Journal of Open Source Software

Secondary mutations in RAD51C and RAD51D are associated with acquired resistance to the PARP inhibitor rucaparib in patients with high-grade ovarian cancer

K Lin, AV Tinker, O Kondrashova, G Ho, M Wakefield, RL Coleman, DM O'Malley, A Floquet, J Sun, L Maloney, H Giordano, T Harding, M Raponi, IA McNeish, E Swisher, CL Scott

Conference Proceedings  |  2016  |  European Journal of Cancer

Xenomapper: Mapping reads in a mixed species context

Matthew J. Wakefield

Journal article  |  2016  |  The Journal of Open Source Software

Influx mechanisms in the embryonic and adult rat choroid plexus: a transcriptome study

Norman R Saunders, Katarzyna M Dziegielewska, Kjeld Mollgard, Mark D Habgood, Matthew J Wakefield, Helen Lindsay, Nathalie Stratzielle, Jean-Francois Ghersi-Egea, Shane A Liddelow

Journal article  |  2015  |  Frontiers in Neuroscience

AmpliVar: Mutation Detection in High-Throughput Sequence from Amplicon-Based Libraries

Arthur L Hsu, Olga Kondrashova, Sebastian Lunke, Clare J Love, Cliff Meldrum, Renate Marquis-Nicholson, Greg Corboy, Pham Kym, Matthew Wakefield, Paul M Waring, Graham R Taylor

Journal article  |  2015  |  Human Mutation

Evolutionary Adaptation of an AraC-Like Regulatory Protein in Citrobacter rodentium and Escherichia Species

Aimee Tan, Nicola K Petty, Dianna Hocking, Vicki Bennett-Wood, Matthew Wakefield, Judyta Praszkier, Marija Tauschek, Ji Yang, Roy Robins-Browne

Journal article  |  2015  |  Infection and Immunity

Age-Dependent Transcriptome and Proteome Following Transection of Neonatal Spinal Cord of Monodelphis domestica (South American Grey Short-Tailed Opossum)

Norman R Saunders, Natassya M Noor, Katarzyna M Dziegielewska, Benjamin J Wheaton, Shane A Liddelow, David L Steer, C Joakim Ek, Mark D Habgood, Matthew J Wakefield, Helen Lindsay, Jessie Truettner, Robert D Miller, A Ian Smith, W Dalton Dietrich

Journal article  |  2014  |  PLoS ONE

Molecular correlates of platinum response in human high-grade serous ovarian cancer patient-derived xenografts

Monique D Topp, Lynne Hartley, Michele Cook, Valerie Heong, Emma Boehm, Lauren McShane, Jan Pyman, Orla McNally, Sumitra Ananda, Marisol Harrell, Dariush Etemadmoghadam, Laura Galletta, Kathryn Alsop, Gillian Mitchell, Stephen B Fox, Jeffrey B Kerr, Karla J Hutt, Scott H Kaufmann, Elizabeth M Swisher, David D Bowtell, et al.

Journal article  |  2014  |  Molecular Oncology

Control of Bacterial Virulence by the RalR Regulator of the Rabbit-Specific Enteropathogenic Escherichia coli Strain E22

Yogitha N Srikhanta, Dianna M Hocking, Matthew J Wakefield, Ellen Higginson, Roy M Robins-Browne, Ji Yang, Marija Tauschek

Journal article  |  2013  |  Infection and Immunity

Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation

Arne W Mould, Zhenyi Pang, Miha Pakusch, Ian D Tonks, Mitchell Stark, Dianne Carrie, Pamela Mukhopadhyay, Annica Seidel, Jonathan J Ellis, Janine Deakin, Matthew J Wakefield, Lutz Krause, Marnie E Blewitt, Graham F Kay

Journal article  |  2013  |  Epigenetics and Chromatin

Mechanisms That Determine the Internal Environment of the Developing Brain: A Transcriptomic, Functional and Ultrastructural Approach

Shane A Liddelow, Katarzyna M Dziegielewska, C Joakim Ek, Mark D Habgood, Hannelore Bauer, Hans-Christian Bauer, Helen Lindsay, Matthew J Wakefield, Nathalie Strazielle, Ingrid Kratzer, Kjeld Mollgard, Jean-Francois Ghersi-Egea, Norman R Saunders

Journal article  |  2013  |  PLoS One

RegR Virulence Regulon of Rabbit-Specific Enteropathogenic Escherichia coli Strain E22

Yogitha N Srikhanta, Dianna M Hocking, Judyta Praszkier, Matthew J Wakefield, Roy M Robins-Browne, Ji Yang, Marija Tauschek

Journal article  |  2013  |  Infection and Immunity

Towards an understanding of the genetic basis behind 1080 (sodium fluoroacetate) tolerance and an investigation of the candidate gene ACO2

Janine E Deakin, Desmond W Cooper, Jennifer J Sinclair, Catherine A Herbert, Marilyn B Renfree, Matthew Wakefield

Journal article  |  2013  |  Australian Journal of Zoology

Genome-Wide Analysis of the Pho Regulon in a pstCA Mutant of Citrobacter rodentium

Catherine Cheng, Matthew J Wakefield, Ji Yang, Marija Tauschek, Roy M Robins-Browne

Journal article  |  2012  |  PLoS One

Involvement of PatE, a Prophage-Encoded AraC-Like Regulator, in the Transcriptional Activation of Acid Resistance Pathways of Enterohemorrhagic Escherichia coli Strain EDL933

Jennifer K Bender, Judyta Praszkier, Matthew J Wakefield, Kathryn Holt, Marija Tauschek, Roy M Robins-Browne, Ji Yang

Journal article  |  2012  |  Applied and Environmental Microbiology

Differential Expression for RNA Sequencing (RNA-Seq) Data: Mapping, Summarization, Statistical Analysis, and Experimental Design

Matthew D Young, Davis J McCarthy, Matthew J Wakefield, Gordon K Smyth, Alicia Oshlack, Mark D Robinson

Book Chapter  |  2012

Differential Expression for RNA Sequencing (RNA-Seq) Data: Mapping, Summarization, Statistical Analysis, and Experimental Design

Matthew D Young, Davis J McCarthy, Matthew J Wakefield, Gordon K Smyth, Alicia Oshlack, Mark D Robinson

Book Chapter  |  2012

Bioinformatics for High Throughput Sequencing

Book  |  2012

ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity

Matthew D Young, Tracy A Willson, Matthew J Wakefield, Evelyn Trounson, Douglas J Hilton, Marnie E Blewitt, Alicia Oshlack, Ian J Majewski

Journal article  |  2011  |  Nucleic Acids Research

A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii)

Chenwei Wang, Lee Webley, Ke-jun Wei, Matthew J Wakefield, Hardip R Patel, Janine E Deakin, Amber Alsop, Jennifer A Marshall Graves, Desmond W Cooper, Frank W Nicholas, Kyall R Zenger

Journal article  |  2011  |  BMC Genetics

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development

Marilyn B Renfree, Anthony T Papenfuss, Janine E Deakin, James Lindsay, Thomas Heider, Katherine Belov, Willem Rens, Paul D Waters, Elizabeth A Pharo, Geoff Shaw, Emily Swwong, Christophe M Lefevre, Kevin R Nicholas, Yoko Kuroki, Matthew J Wakefield, Kyall R Zenger, Chenwei Wang, Malcolm Ferguson-Smith, Frank W Nicholas, Danielle Hickford, et al.

Journal article  |  2011  |  Genome Biology

Gene ontology analysis for RNA-seq: accounting for selection bias

Matthew D Young, Matthew J Wakefield, Gordon K Smyth, Alicia Oshlack

Journal article  |  2010  |  Genome Biology

Insight into Evolution of Gene Regulation Networks from the Opossum Genome

Matthew J Wakefield, Anthony T Papenfuss

Book Chapter  |  2010

Marsupial Sequencing Projects and Bioinformatics Challenges

Anthony T Papenfuss, Arthur Hsu, Matthew Wakefield

Book Chapter  |  2010

Transcript length bias in RNA-seq data confounds systems biology

Alicia Oshlack, Matthew J Wakefield

Journal article  |  2009  |  Biology Direct

Isolation and characterization of 10 MHC Class I-associated microsatellite loci in tammar wallaby (Macropus eugenii)

Yuanyuan Cheng, Matthew Wakefield, Hannah V Siddle, Penny C Coggill, Cathy A Herbert, Stephan Beck, Katherine Belov, Mark DB Eldridge

Journal article  |  2009  |  Molecular Ecology Resources

Physical map of two tammar wallaby chromosomes: A strategy for mapping in non-model mammals

Janine E Deakin, Edda Koina, Paul D Waters, Ruth Doherty, Vidushi S Patel, Margaret L Delbridge, Bianca Dobson, James Fong, Yanqiu Hu, Cecilia van den Hurk, Andrew J Pask, Geoff Shaw, Carly Smith, Katherine Thompson, Matthew J Wakefield, Hongshi Yu, Marilyn B Renfree, Jennifer A Marshall Graves

Journal article  |  2008  |  Chromosome Research

RegA, an AraC-Like Protein, Is a Global Transcriptional Regulator That Controls Virulence Gene Expression in Citrobacter rodentium

Emily Hart, Ji Yang, Marija Tauschek, Michelle Kelly, Matthew J Wakefield, Gad Frankel, Elizabeth L Hartland, Roy M Robins-Browne

Journal article  |  2008  |  Infection and Immunity

Genome analysis of the platypus reveals unique signatures of evolution (vol 453, pg 175, 2008)

Wesley C Warren, LaDeana W Hillier, Jennifer A Marshall Graves, Ewan Birney, Chris P Ponting, Frank Grutzner, Katherine Belov, Webb Miller, Laura Clarke, Asif T Chinwalla, Shiaw-Pyng Yang, Andreas Heger, Devin P Locke, Pat Miethke, Paul D Waters, Frederic Veyrunes, Lucinda Fulton, Bob Fulton, Tina Graves, John Wallis, et al.

Journal article  |  2008  |  Nature

Genome analysis of the platypus reveals unique signatures of evolution

Wesley C Warren, LaDeana W Hillier, Jennifer A Marshall Graves, Ewan Birney, Chris P Ponting, Frank Grutzner, Katherine Belov, Webb Miller, Laura Clarke, Asif T Chinwalla, Shiaw-Pyng Yang, Andreas Heger, Devin P Locke, Pat Miethke, Paul D Waters, Frederic Veyrunes, Lucinda Fulton, Bob Fulton, Tina Graves, John Wallis, et al.

Journal article  |  2008  |  Nature

Cone visual pigments of monotremes: Filling the phylogenetic gap

Matthew J Wakefield, Mark Anderson, Ellen Chang, Ke-Jun Wei, Rajinder Kaul, Jennifer A Marshall Graves, Frank Gruetzner, Samir S Deeb

Conference Proceedings  |  2008  |  Visual Neuroscience

Rates of genome evolution and branching order from whole genome analysis

Gavin A Huttley, Matthew J Wakefield, Simon Easteal

Journal article  |  2007  |  Molecular Biology and Evolution

Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

Andrew J Gentles, Matthew J Wakefield, Oleksiy Kohany, Wanjun Gu, Mark A Batzer, David D Pollock, Jerzy Jurka

Journal article  |  2007  |  Genome Research

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

Tarjei S Mikkelsen, Matthew J Wakefield, Bronwen Aken, Chris T Amemiya, Jean L Chang, Shannon Duke, Manuel Garber, Andrew J Gentles, Leo Goodstadt, Andreas Heger, Jerzy Jurka, Michael Kamal, Evan Mauceli, Stephen MJ Searle, Ted Sharpe, Michelle L Baker, Mark A Batzer, Panayiotis V Benos, Katherine Belov, Michele Clamp, et al.

Journal article  |  2007  |  Nature

The region homologous to the X-chromosome inactivation centre has been disrupted in marsupial and monotreme mammals

Timothy A Hore, Edda Koina, Matthew J Wakefield, Jennifer A Marshall Graves

Journal article  |  2007  |  Chromosome Research

DMRT gene cluster analysis in the platypus: New insights into genomic organization and regulatory regions

Nisrine El-Mogharbel, Matthew Wakefield, Janine E Deakin, Enkhjargal Tsend-Ayush, Frank Grutzner, Amber Alsop, Tariq Ezaz, Jennifer A Marshall Graves

Journal article  |  2007  |  Genomics

PyCogent: a toolkit for making sense from sequence

Rob Knight, Peter Maxwell, Amanda Birmingham, Jason Carnes, J Gregory Caporaso, Brett C Easton, Michael Eaton, Micah Hamady, Helen Lindsay, Zongzhi Liu, Catherine Lozupone, Daniel McDonald, Michael Robeson, Raymond Sammut, Sandra Smit, Matthew J Wakefield, Jeremy Widmann, Shandy Wikman, Stephanie Wilson, Hua Ying, et al.

Journal article  |  2007  |  Genome Biology

Y chromosome microsatellite markers identified from the tammar wallaby (Macropus eugenii) and their amplification in three other macropod species

Anna J MacDonald, Natasha Sankovic, Stephen D Sarre, Nancy N Fitzsimmons, Matthew J Wakefield, Jennifer A Marshall Graves, Kyall R Zenger

Journal article  |  2006  |  Molecular Ecology Notes

Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex

K Belov, JE Deakin, AT Papenfuss, ML Baker, SD Melman, HV Siddle, N Gouin, DL Goode, TJ Sargeant, MD Robinson, MJ Wakefield, S Mahony, JGR Cross, PV Benos, PB Samollow, TP Speed, JAM Graves, RD Miller

Journal article  |  2006  |  PLoS Biology

Assignment of BReast Cancer Associated 1 (BRCA1) to tammar wallaby (Macropus eugenii) chromosome 2q3 by in situ hybridization

MJ Wakefield, AE Alsop

Journal article  |  2006  |  Cytogenet. Genome Res.

Genomics - from Neanderthals to high-throughput sequencing

Matthew John Wakefield

Journal article  |  2006  |  Genome Biology

Isolation, X location and activity of the marsupial homologue of SLC16A2, an XIST-flanking gene in eutherian mammals

E Koina, MJ Wakefield, C Walcher, CM Disteche, S Whitehead, M Ross, JAM Graves

Journal article  |  2005  |  Chromosome Research

Discussion of "A Bayesian approach to DNA sequence segmentation"

HS Booth, CJ Burden, JH Maindonald, L Santoso, MJ Wakefield, SR Wilson

Journal article  |  2005  |  Biometrics

Vestige: Maximum likelihood phylogenetic footprinting

MJ Wakefield, P Maxwell, GA Huttley

Journal article  |  2005  |  BMC Bioinformatics

Marsupials and monotremes sort genome treasures from junk

MJ Wakefield, JAM Graves

Journal article  |  2005  |  Genome Biology

Cone visual pigments of the Australian marsupials, the stripe-faced and fat-tailed dunnarts: Sequence and inferred spectral properties

J Strachan, LYE Chang, MJ Wakefield, JAM Graves, SS Deeb

Conference Proceedings  |  2004  |  Visual Neuroscience

PyEvolve: a toolkit for statistical modelling of molecular evolution

A Butterfield, V Vedagiri, E Lang, C Lawrence, MJ Wakefield, A Isaev, GA Huttley

Journal article  |  2004  |  BMC Bioinformatics

The cone visual pigments of an Australian marsupial, the tammar wallaby (Macropus eugenii): Sequence, spectral tuning, and evolution

SS Deeb, MJ Wakefield, T Tada, L Marotte, S Yokoyama, JAM Graves

Journal article  |  2003  |  Molecular Biology and Evolution

The cone visual pigments of an Australian marsupial, the tammar wallaby (Macropus eugenii): Sequence spectral tuning and evolution

SS Deeb, M Wakefield, L Marotte, JA Graves

Conference Proceedings  |  2003  |  INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE

The kangaroo genome - Leaps and bounds in comparative genomics

MJ Wakefield, JAM Graves

Journal article  |  2003  |  EMBO reports

Chromosomal painting detects non-random chromosome arrangement in dasyurid marsupial sperm

IK Greaves, M Svartman, M Wakefield, D Taggart, A De Leo, MA Ferguson-Smith, W Rens, PCM O'Brien, L Voullaire, M Westerman, JAM Graves

Journal article  |  2001  |  Chromosome Research

The minimal mammalian Y chromosome - the marsupial Y as a model system

R Toder, MJ Wakefield, JAM Graves

Journal article  |  2000  |  Cytogenetic and Genome Research

The origin and evolution of the pseudoautosomal regions of human sex chromosomes

JAM Graves, MJ Wakefield, R Toder

Journal article  |  1998  |  Human Molecular Genetics

Histone underacetylation is an ancient component of mammalian X chromosome inactivation

MJ Wakefield, AM Keohane, BM Turner, JAM Graves

Journal article  |  1997  |  Proceedings of the National Academy of Sciences

Comparative genome organization of vertebrates

L Andersson, A Archibald, M Ashburner, S Audun, W Barendse, J Bitgood, C Bottema, T Broad, S Brown, D Burt, C Charlier, N Copeland, S Davis, M Davisson, J Edwards, A Eggen, G Elgar, JT Eppig, I Franklin, P Grewe, et al.

Journal article  |  1996  |  Mammalian Genome

Comparative maps of vertebrates

MJ Wakefield, JAM Graves

Journal article  |  1996  |  Mammalian Genome