Daniel Schmidt

Novel mammogram-based measures improve breast cancer risk prediction beyond an established mammographic density measure

Tuong L Nguyen, Daniel F Schmidt, Enes Makalic, Gertraud Maskarinec, Shuai Li, Gillian S Dite, Ye K Aung, Christopher F Evans, Ho N Trinh, Laura Baglietto, Jennifer Stone, Yun-Mi Song, Joohon Sung, Robert J MacInnis, Pierre-Antoine Dugue, James G Dowty, Mark A Jenkins, Roger L Milne, Melissa C Southey, Graham G Giles, et al.

Journal article  |  2020  |  International Journal of Cancer

Mammograms contain information that predicts breast cancer risk. We developed two novel mammogram-based breast cancer risk measure..

InceptionTime: Finding AlexNet for time series classification

Hassan Ismail Fawaz, Benjamin Lucas, Germain Forestier, Charlotte Pelletier, Daniel F Schmidt, Jonathan Weber, Geoffrey Webb, Lhassane Idoumghar, Pierre-Alain Muller, Francois Petitjean

Journal article  |  2020  |  Data Mining and Knowledge Discovery

Transcriptome-wide association study of breast cancer risk by estrogen-receptor status

Helian Feng, Alexander Gusev, Bogdan Pasaniuc, Lang Wu, Jirong Long, Zomoroda Abu-full, Kristiina Aittomaki, Irene L Andrulis, Hoda Anton-Culver, Antonis C Antoniou, Adalgeir Arason, Volker Arndt, Kristan J Aronson, Banu K Arun, Ella Asseryanis, Paul L Auer, Jacopo Azzollini, Judith Balmana, Rosa B Barkardottir, Daniel R Barnes, et al.

Journal article  |  2020  |  Genetic Epidemiology

Previous transcriptome-wide association studies (TWAS) have identified breast cancer risk genes by integrating data from expressio..

An efficient algorithm for sampling from sin(k) (x) for generating random correlation matrices

Enes Makalic, Daniel F Schmidt

Journal article  |  2020  |  Communications in Statistics - Simulation and Computation

Fine-mapping of 150 breast cancer risk regions identifies 191 likely target genes

Laura Fachal, Hugues Aschard, Jonathan Beesley, Daniel R Barnes, Jamie Allen, Siddhartha Kar, Karen A Pooley, Joe Dennis, Kyriaki Michailidou, Constance Turman, Penny Soucy, Audrey Lemacon, Michael Lush, Jonathan P Tyrer, Maya Ghoussaini, Mahdi Moradi Marjaneh, Xia Jiang, Simona Agata, Kristiina Aittomaki, M Rosario Alonso, et al.

Journal article  |  2020  |  Nature Genetics

Genome-wide association studies have identified breast cancer risk variants in over 150 genomic regions, but the mechanisms underl..

Bayesian Generalized Horseshoe Estimation of Generalized Linear Models

DF Schmidt, E Makalic

Conference Proceedings  |  2020  |  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Overall lack of replication of associations between dietary intake of folate and vitamin B-12 and DNA methylation in peripheral blood

Pierre-Antoine Dugue, James A Chamberlain, Julie K Bassett, Allison M Hodge, Maree T Brinkman, JiHoon E Joo, Chol-Hee Jung, Ee Ming Wong, Enes Makalic, Daniel F Schmidt, John L Hopper, Daniel D Buchanan, Dallas R English, Roger L Milne, Melissa C Southey, Graham G Giles

Journal article  |  2020  |  American Journal of Clinical Nutrition

Alcohol consumption is associated with widespread changes in blood DNA methylation: Analysis of cross-sectional and longitudinal data

Pierre-Antoine Dugue, Rory Wilson, Benjamin Lehne, Harindra Jayasekara, Xiaochuan Wang, Chol-Hee Jung, JiHoon E Joo, Enes Makalic, Daniel F Schmidt, Laura Baglietto, Gianluca Severi, Christian Gieger, Karl-Heinz Ladwig, Annette Peters, Jaspal S Kooner, Melissa C Southey, Dallas R English, Melanie Waldenberger, John C Chambers, Graham G Giles, et al.

Journal article  |  2019  |  Addiction Biology

Ability of known susceptibility SNPs to predict colorectal cancer risk for persons with and without a family history

Mark A Jenkins, Aung K Win, James G Dowty, Robert J MacInnis, Enes Makalic, Daniel F Schmidt, Gillian S Dite, Mirosl Kapuscinski, Mark Clendenning, Christophe Rosty, Ingrid M Winship, Jon D Emery, Sibel Saya, Finlay A Macrae, Dennis J Ahnen, David Duggan, Jane C Figueiredo, Noralane M Lindor, Robert W Haile, John D Potter, et al.

Journal article  |  2019  |  FAMILIAL CANCER

Before SNP-based risk can be incorporated in colorectal cancer (CRC) screening, the ability of these SNPs to estimate CRC risk for..

Smoking and blood DNA methylation: an epigenome-wide association study and assessment of reversibility

Pierre-Antoine Dugue, Chol-Hee Jung, Jihoon E Joo, Xiaochuan Wang, Ee Ming Wong, Enes Makalic, Daniel F Schmidt, Laura Baglietto, Gianluca Severi, Melissa C Southey, Dallas R English, Graham G Giles, Roger L Milne

Journal article  |  2019  |  Epigenetics