Anna Syme

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Alexander E Ostrovsky, Alexandru Mahmoud, Andrew J Lonie, Anna Syme, Anne Fouilloux, Anthony Bretaudeau, Anton Nekrutenko, Anup Kumar, Arthur C Eschenlauer, Assunta D DeSanto, Aysam Guerler, Beatriz Serrano-Solano, Berenice Batut, Bjoern A Gruening, Bradley W Langhorst, Bridget Carr, Bryan A Raubenolt, Cameron J Hyde, Catherine J Bromhead, Christopher B Barnett, et al.

Journal article  |  2022  |  NUCLEIC ACIDS RESEARCH

Galaxy is a mature, browser accessible workbench for scientific computing. It enables scientists to share, analyze and visualize t..

Long-read assemblies reveal structural diversity in genomes of organelles - an example with Acacia pycnantha.

Anna E Syme, Todd GB McLay, Frank Udovicic, David J Cantrill, Daniel J Murphy

Journal article  |  2021  |  GigaByte

Organelle genomes are typically represented as single, static, circular molecules. However, there is evidence that the chloroplast..

Long-read assemblies reveal structural diversity in genomes of organelles - an example with Acacia pycnantha

Anna E Syme, Todd GB McLay, Frank Udovicic, David J Cantrill, Daniel J Murphy

Journal article  |  2020

AbstractAlthough organelle genomes are typically represented as single, static, circular molecules, there is evidence that the chl..

Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software

Peter Georgeson, Anna Syme, Clare Sloggett, Jessica Chung, Harriet Dashnow, Michael Milton, Andrew Lonsdale, David Powell, Torsten Seemann, Bernard Pope

Journal article  |  2019  |  GIGASCIENCE

BACKGROUND: Bioinformatics software tools are often created ad hoc, frequently by people without extensive training in software de..

Capacity To Utilize Raffinose Dictates Pneumococcal Disease Phenotype

Vikrant Minhas, Richard M Harvey, Lauren J McAllister, Torsten Seemann, Anna E Syme, Sarah L Baines, James C Paton, Claudia Trappetti

Journal article  |  2019  |  MBIO

Streptococcus pneumoniae is commonly carried asymptomatically in the human nasopharynx, but it also causes serious and invasive di..

Molecular phylogenetics provides new insights into the systematics of Pimelea and Thecanthes (Thymelaeaceae)

Charles SP Foster, David J Cantrill, Elizabeth A James, Anna E Syme, Rebecca Jordan, Rachel Douglas, Simon YW Ho, Murray J Henwood

Journal article  |  2016  |  AUSTRALIAN SYSTEMATIC BOTANY

Pimelea Banks & Sol. ex Gaertn. is a genus of flowering plants comprising an estimated 90 species in Australia and ∼35 species in ..

Invertebrate diversity of the unexplored marine western margin of Australia: taxonomy and implications for global biodiversity

Gary CB Poore, Lynda Avery, Magda Blazewicz-Paszkowycz, Joanna Browne, Niel L Bruce, Sarah Gerken, Chris Glasby, Elizabeth Greaves, Anna W McCallum, David Staples, Anna Syme, Joanne Taylor, Genefor Walker-Smith, Mark Warne, Charlotte Watson, Alan Williams, Robin S Wilson, Skipton Woolley

Journal article  |  2015  |  MARINE BIODIVERSITY

However derived, predictions of global marine species diversity rely on existing real data. All methods, whether based on past rat..

Productivity enhances benthic species richness along an oligotrophic Indian Ocean continental margin

Anna W McCallum, Skipton Woolley, Magda Blazewicz-Paszkowycz, Joanna Browne, Sarah Gerken, Rudy Kloser, Gary CB Poore, David Staples, Anna Syme, Joanne Taylor, Genefor Walker-Smith, Alan Williams, Robin S Wilson

Journal article  |  2015  |  GLOBAL ECOLOGY AND BIOGEOGRAPHY

Aims: Marine soft sediments cover much of the deep ocean and are one of the largest habitats in the world, yet much of our underst..

A test of sequence-matching algorithms for a DNA barcode database of invasive grasses

AE Syme, F Udovicic, V Stajsic, DJ Murphy

Journal article  |  2013  |  DNA Barcodes

An expanded phylogenetic analysis of Austrostipa (Poaceae: Stipeae) to test infrageneric relationships

Anna E Syme, Daniel J Murphy, Gareth D Holmes, Stuart Gardner, Rachael Fowler, David J Cantrill

Journal article  |  2012  |  AUSTRALIAN SYSTEMATIC BOTANY

Although the Australasian grass genus Austrostipa is species rich, abundant and ecologically significant, the subgeneric classific..