Michael Goddard

Effect direction meta-analysis of GWAS identifies extreme, prevalent and shared pleiotropy in a large mammal

Ruidong Xiang, Irene van den Berg, Iona M MacLeod, Hans D Daetwyler, Michael E Goddard

Journal article  |  2020  |  Communications Biology

In genome-wide association studies (GWAS), variants showing consistent effect directions across populations are considered as true..

Improved polygenic prediction by Bayesian multiple regression on summary statistics

Luke R Lloyd-Jones, Jian Zeng, Julia Sidorenko, Loic Yengo, Gerhard Moser, Kathryn E Kemper, Huanwei Wang, Zhili Zheng, Reedik Magi, Tonu Esko, Andres Metspalu, Naomi R Wray, Michael E Goddard, Jian Yang, Peter M Visscher

Journal article  |  2019  |  Nature Communications

Accurate prediction of an individual's phenotype from their DNA sequence is one of the great promises of genomics and precision me..

Strong selection pressures maintain divergence on genomic islands in Atlantic cod (Gadus morhua L.) populations

Silvia T Rodriguez-Ramilo, Matthew Baranski, Hooman Moghadam, Harald Grove, Sigbjorn Lien, Mike E Goddard, Theo HE Meuwissen, Anna K Sonesson

Journal article  |  2019  |  Genetics Selection Evolution

BACKGROUND: Two distinct populations have been extensively studied in Atlantic cod (Gadus morhua L.): the Northeast Arctic cod (NE..

Quantifying the contribution of sequence variants with regulatory and evolutionary significance to 34 bovine complex traits

Ruidong Xiang, Irene van den Berg, Iona M MacLeod, Benjamin J Hayes, Claire P Prowse-Wilkins, Min Wang, Sunduimijid Bolormaa, Zhiqian Liu, Simone J Rochfort, Coralie M Reich, Brett A Mason, Christy J Vander Jagt, Hans D Daetwyler, Mogens S Lund, Amanda J Chamberlain, Michael E Goddard

Journal article  |  2019  |  Proceedings of the National Academy of Sciences

The use of mid-infrared spectra to map genes affecting milk composition

A Benedet, PN Ho, R Xiang, S Bolormaa, M De Marchi, ME Goddard, JE Pryce

Journal article  |  2019  |  Journal of Dairy Science

Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank

Huanwei Wang, Futao Zhang, Jian Zeng, Yang Wu, Kathryn E Kemper, Angli Xue, Min Zhang, Joseph E Powell, Michael E Goddard, Naomi R Wray, Peter M Visscher, Allan F McRae, Jian Yang

Journal article  |  2019  |  Science Advances

Overlap between eQTL and QTL associated with production traits and fertility in dairy cattle

I van den Berg, BJ Hayes, AJ Chamberlain, ME Goddard

Journal article  |  2019  |  BMC Genomics

Complex Trait Prediction from Genome Data: Contrasting EBV in Livestock to PRS in Humans Genomic Prediction

Naomi R Wray, Kathryn E Kemper, Benjamin J Hayes, Michael E Goddard, Peter M Visscher

Journal article  |  2019  |  Genetics

Predicting the effect of reference population on the accuracy of within, across, and multibreed genomic prediction

I van den Berg, THE Meuwissen, IM MacLeod, ME Goddard

Journal article  |  2019  |  Journal of Dairy Science

From RA Fisher's 1918 Paper to GWAS a Century Later

Peter M Visscher, Michael E Goddard

Journal article  |  2019  |  Genetics

Functional Annotation of Animal Genomes (FAANG): Current Achievements and Roadmap

Elisabetta Giuffra, Christopher K Tuggle, Alan L Archibald, Herve Acloque, Amanda J Chamberlain, Guy Cochrane, Hans D Daetwyler, Sarah Djebali, Lel Eory, Sylvain Foissac, Michael E Goddard, Martien AM Groenen, Michelle Halstead, Peter W Harrison, Benjamin J Hayes, Colin Kern, Hasan Khatib, Richard I Kuo, David E MacHugh, Iona M Macleod, et al.

Book Chapter  |  2019  |  Annual Review of Animal Biosciences

Narrow-sense heritability estimation of complex traits using identity-by-descent information

Luke M Evans, Rasool Tahmasbi, Matt Jones, Scott Vrieze, Goncalo R Abecasis, Sayantan Das, Douglas W Bjelland, Teresa R de Candia, Jian Yang, Michael E Goddard, Peter M Visscher, Matthew C Keller

Journal article  |  2018  |  Heredity

Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle

Majid Khansefid, Jennie E Pryce, Sunduimijid Bolormaa, Yizhou Chen, Catriona A Millen, Amanda J Chamberlain, Christy J Vander Jagt, Michael E Goddard

Journal article  |  2018  |  BMC Genomics

The feasibility of using low-density marker panels for genotype imputation and genomic prediction of crossbred dairy cattle of East Africa

H Aliloo, R Mrode, AM Okeyo, G Ni, ME Goddard, JP Gibson

Journal article  |  2018  |  Journal of Dairy Science

Genome variants associated with RNA splicing variations in bovine are extensive shared between tissues

Ruidong Xiang, Ben J Hayes, Christy J Vander Jagt, Iona M MacLeod, Majid Khansefid, Phil J Bowman, Zehu Yuan, Claire P Prowse-Wilkins, Coralie M Reich, Brett A Mason, Josie B Garner, Leah C Marett, Yizhou Chen, Sunduimijid Bolormaa, Hans D Daetwyler, Amanda J Chamberlain, Michael E Goddard

Journal article  |  2018  |  BMC Genomics

Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits

Min Wang, Timothy P Hancock, Amanda J Chamberlain, Christy J Vander Jagt, Jennie E Pryce, Benjamin G Cocks, Mike E Goddard, Benjamin J Hayes

Journal article  |  2018  |  BMC Genomics

Comparison of methods that use whole genome data to estimate the heritability and genetic architecture of complex traits

Luke M Evans, Rasool Tahmasbi, Scott I Vrieze, Goncalo R Abecasis, Sayantan Das, Steven Gazal, Douglas W Bjelland, Teresa R de Candia, Michael E Goddard, Benjamin M Neale, Jian Yang, Peter M Visscher, Matthew C Keller

Journal article  |  2018  |  Nature Genetics

Multibreed genomic prediction using multitrait genomic residual maximum likelihood and multitask Bayesian variable selection

MPL Calus, ME Goddard, YCJ Wientjes, PJ Bowman, BJ Hayes

Journal article  |  2018  |  Journal of Dairy Science

A multi-trait Bayesian method for mapping QTL and genomic prediction

Kathryn E Kemper, Philip J Bowman, Benjamin J Hayes, Peter M Visscher, Michael E Goddard

Journal article  |  2018  |  Genetics Selection Evolution

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

Aniek C Bouwman, Hans D Daetwyler, Amanda J Chamberlain, Carla Hurtado Ponce, Mehdi Sargolzaei, Flavio S Schenkel, Goutam Sahana, Armelle Govignon-Gion, Simon Boitard, Marlies Dolezal, Hubert Pausch, Rasmus F Brondum, Phil J Bowman, Bo Thomsen, Bernt Guldbrandtsen, Mogens S Lund, Bertrand Servin, Dorian J Garrick, James Reecy, Johanna Vilkki, et al.

Journal article  |  2018  |  Nature Genetics

Meta-analysis of sequence-based association studies across three cattle breeds reveals 25 QTL for fat and protein percentages in milk at nucleotide resolution

Hubert Pausch, Reiner Emmerling, Birgit Gredler-Grandl, Ruedi Fries, Hans D Daetwyler, Michael E Goddard

Journal article  |  2017  |  BMC Genomics

Gene expression analysis of blood, liver, and muscle in cattle divergently selected for high and low residual feed intake

M Khansefid, CA Millen, Y Chen, JE Pryce, AJ Chamberlain, CJ Vander Jagt, C Gondro, ME Goddard

Journal article  |  2017  |  Journal of Animal Science

Multi-breed genomic prediction using Bayes R with sequence data and dropping variants with a small effect

Irene van den Berg, Phil J Bowman, Iona M MacLeod, Ben J Hayes, Tingting Wang, Sunduimijid Bolormaa, Mike E Goddard

Journal article  |  2017  |  Genetics Selection Evolution

Concepts, estimation and interpretation of SNP-based heritability

Jian Yang, Jian Zeng, Michael E Goddard, Naomi R Wray, Peter M Visscher

Journal article  |  2017  |  Nature Genetics

Genome-wide comparative analyses of correlated and uncorrelated phenotypes identify major pleiotropic variants in dairy cattle

Ruidong Xiang, Iona M MacLeod, Sunduimijid Bolormaa, Michael E Goddard

Journal article  |  2017  |  Scientific Reports

Multiple-trait QTL mapping and genomic prediction for wool traits in sheep

Sunduimijid Bolormaa, Andrew A Swan, Daniel J Brown, Sue Hatcher, Nasir Moghaddar, Julius H van der Werf, Michael E Goddard, Hans D Daetwyler

Journal article  |  2017  |  Genetics Selection Evolution

Application of a Bayesian non-linear model hybrid scheme to sequence data for genomic prediction and QTL mapping

Tingting Wang, Yi-Ping Phoebe Chen, Iona M MacLeod, Jennie E Pryce, Michael E Goddard, Ben J Hayes

Journal article  |  2017  |  BMC Genomics

Can we make genomic selection 100% accurate?

ME Goddard

Journal article  |  2017  |  Journal of Animal Breeding and Genetics

Evaluation of the accuracy of imputed sequence variant genotypes and their utility for causal variant detection in cattle

Hubert Pausch, Iona M MacLeod, Ruedi Fries, Reiner Emmerling, Phil J Bowman, Hans D Daetwyler, Michael E Goddard

Journal article  |  2017  |  Genetics Selection Evolution

Using information of relatives in genomic prediction to apply effective stratified medicine

S Hong Lee, WM Shalanee P Weerasinghe, Naomi R Wray, Michael E Goddard, Julius HJ van der Werf

Journal article  |  2017  |  Scientific Reports

Including nonadditive genetic effects in mating programs to maximize dairy farm profitability

H Aliloo, JE Pryce, O Gonzalez-Recio, BG Cocks, ME Goddard, BJ Hayes

Journal article  |  2017  |  Journal of Dairy Science

Leveraging genetically simple traits to identify small-effect variants for complex phenotypes

KE Kemper, MD Littlejohn, T Lopdell, BJ Hayes, LE Bennett, RP Williams, XQ Xu, PM Visscher, MJ Carrick, ME Goddard

Journal article  |  2016  |  BMC Genomics

A hybrid expectation maximisation and MCMC sampling algorithm to implement Bayesian mixture model based genomic prediction and QTL mapping

Tingting Wang, Yi-Ping Phoebe Chen, Phil J Bowman, Michael E Goddard, Ben J Hayes

Journal article  |  2016  |  BMC Genomics

Improving genomic selection across breeds and across generations with functional annotation.

B Hayes, AJ Chamberlain, H Daetwyler, CJ Vander Jagt, ME Goddard

Conference Proceedings  |  2016  |  Journal of Animal Science

Models for Genome x Environment Interaction: Examples in Livestock

Ben J Hayes, Hans D Daetwyler, Mike E Goddard

Journal article  |  2016  |  Crop Science

The extent of cis-regulation of gene expression and its influence on complex trait variation in cattle

AJ Chamberlain, M Khansefid, CJ Vander Jagt, BJ Hayes, LC Marett, Y Chen, S Bolormaa, CA Millen, TT Nguyen, ME Goddard

Conference Proceedings  |  2016  |  Journal of Animal Science

GCTA-GREML accounts for linkage disequilibrium when estimating genetic variance from genome-wide SNPs

Jian Yang, S Hong Lee, Naomi R Wray, Michael E Goddard, Peter M Visscher

Journal article  |  2016  |  Proceedings of the National Academy of Sciences

Genetics of complex traits: prediction of phenotype, identification of causal polymorphisms and genetic architecture

ME Goddard, KE Kemper, IM MacLeod, AJ Chamberlain, BJ Hayes

Journal article  |  2016  |  Proceedings of the Royal Society B: Biological Sciences

Inflammatory-Related Genetic Variants in Non-Muscle-Invasive Bladder Cancer Prognosis: A Multimarker Bayesian Assessment

Alexandra Masson-Lecomte, Evangelina Lopez de Maturana, Michael E Goddard, Antoni Picornell, Marta Rava, Anna Gonzalez-Neira, Mirari Marquez, Alfredo Carrato, Adonina Tardon, Josep Lloreta, Montserrat Garcia-Closas, Debra Silverman, Nathaniel Rothman, Manolis Kogevinas, Yves Allory, Stephen J Chanock, Francisco X Real, Nuria Malats

Journal article  |  2016  |  Cancer Epidemiology Biomarkers & Prevention

Risk of psychiatric illness from advanced paternal age is not predominantly from de novo mutations

Jacob Gratten, Naomi R Wray, Wouter J Peyrot, John J McGrath, Peter M Visscher, Michael E Goddard

Journal article  |  2016  |  Nature Genetics

Copy number variants in the sheep genome detected using multiple approaches

Gemma M Jenkins, Michael E Goddard, Michael A Black, Rudiger Brauning, Benoit Auvray, Ken G Dodds, James W Kijas, Noelle Cockett, John C McEwan

Journal article  |  2016  |  BMC Genomics

Prediction of non-muscle invasive bladder cancer outcomes assessed by innovative multimarker prognostic models

E Lopez de Maturana, A Picornell, A Masson-Lecomte, M Kogevinas, M Marquez, A Carrato, A Tardon, J Lloreta, M Garcia-Closas, D Silverman, N Rothman, S Chanock, FX Real, ME Goddard, N Malats

Journal article  |  2016  |  BMC Cancer

Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets

Zhihong Zhu, Futao Zhang, Han Hu, Andrew Bakshi, Matthew R Robinson, Joseph E Powell, Grant W Montgomery, Michael E Goddard, Naomi R Wray, Peter M Visscher, Jian Yang

Journal article  |  2016  |  Nature Genetics

Detailed phenotyping identifies genes with pleiotropic effects on body composition

Sunduimijid Bolormaa, Ben J Hayes, Julius HJ van der Werf, David Pethick, Michael E Goddard, Hans D Daetwyler

Journal article  |  2016  |  BMC Genomics

Technical note: Equivalent genomic models with a residual polygenic effect

Z Liu, ME Goddard, BJ Hayes, F Reinhardt, R Reents

Journal article  |  2016  |  Journal of Dairy Science

Exploiting biological priors and sequence variants enhances QTL discovery and genomic prediction of complex traits

IM MacLeod, PJ Bowman, CJ Vander Jagt, M Haile-Mariam, KE Kemper, AJ Chamberlain, C Schrooten, BJ Hayes, ME Goddard

Journal article  |  2016  |  BMC Genomics

Targeted imputation of sequence variants and gene expression profiling identifies twelve candidate genes associated with lactation volume, composition and calving interval in dairy cattle

Lesley-Ann Raven, Benjamin G Cocks, Kathryn E Kemper, Amanda J Chamberlain, Christy J Vander Jagt, Michael E Goddard, Ben J Hayes

Journal article  |  2016  |  Mammalian Genome

Gene expression in the mammary gland of the tammar wallaby during the lactation cycle reveals conserved mechanisms regulating mammalian lactation

CJ Vander Jagt, JC Whitley, BG Cocks, ME Goddard

Journal article  |  2016  |  Reproduction, Fertility and Development

Genomic selection: A paradigm shift in animal breeding

Theo Meuwissen, Ben Hayes, Mike Goddard

Journal article  |  2016  |  Animal Frontiers

Rare Variants in Transcript and Potential Regulatory Regions Explain a Small Percentage of the Missing Heritability of Complex Traits in Cattle

Oscar Gonzalez-Recio, Hans D Daetwyler, Iona M MacLeod, Jennie E Pryce, Phil J Bowman, Ben J Hayes, Michael E Goddard

Journal article  |  2015  |  PLOS ONE

Extensive variation between tissues in allele specific expression in an outbred mammal

Amanda J Chamberlain, Christy J Vander Jagt, Benjamin J Hayes, Majid Khansefid, Leah C Marett, Catriona A Millen, Thuy TT Nguyen, Michael E Goddard

Journal article  |  2015  |  BMC Genomics

Two-Variance-Component Model Improves Genetic Prediction in Family Datasets

George Tucker, Po-Ru Loh, Iona M MacLeod, Ben J Hayes, Michael E Goddard, Bonnie Berger, Alkes L Price

Journal article  |  2015  |  The American Journal of Human Genetics

Population genetic differentiation of height and body mass index across Europe

Matthew R Robinson, Gibran Hemani, Carolina Medina-Gomez, Massimo Mezzavilla, Tonu Esko-, Konstantin Shakhbazov, Joseph E Powell, Anna Vinkhuyzen, Sonja I Berndt, Stefan Gustafsson, Anne E Justice, Bratati Kahali, Adam E Locke, Tune H Pers, Sailaja Vedantam, Andrew R Wood, Wouter van Rheenen, Ole A Andreassen, Paolo Gasparini, Andres Metspalu, et al.

Journal article  |  2015  |  Nature Genetics

Hot topic: Definition and implementation of a breeding value for feed efficiency in dairy cows

JE Pryce, O Gonzalez-Recio, G Nieuwhof, WJ Wales, MP Coffey, BJ Hayes, ME Goddard

Journal article  |  2015  |  Journal of Dairy Science

Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores

Bjarni J Vilhjalmsson, Jian Yang, Hilary K Finucane, Alexander Gusev, Sara Lindstrom, Stephan Ripke, Giulio Genovese, Po-Ru Loh, Gaurav Bhatia, Ron Do, Tristan Hayeck, Hong-Hee Won, Sekar Kathiresan, Michele Pato, Carlos Pato, Rulla Tamimi, Eli Stahl, Noah Zaitlen, Bogdan Pasaniuc, Gillian Belbin, et al.

Journal article  |  2015  |  The American Journal of Human Genetics

Genetic variance estimation with imputed variants finds negligible missing heritability for human height and body mass index

Jian Yang, Andrew Bakshi, Zhihong Zhu, Gibran Hemani, Anna AE Vinkhuyzen, Sang Hong Lee, Matthew R Robinson, John RB Perry, Ilja M Nolte, Jana V van Vliet-Ostaptchouk, Harold Snieder, Tonu Esko, Lili Milani, Reedik Maegi, Andres Metspalu, Anders Hamsten, Patrik KE Magnusson, Nancy L Pedersen, Erik Ingelsson, Nicole Soranzo, et al.

Journal article  |  2015  |  Nature Genetics

Impact of QTL properties on the accuracy of multi-breed genomic prediction

Yvonne CJ Wientjes, Mario PL Calus, Michael E Goddard, Ben J Hayes

Journal article  |  2015  |  Genetics Selection Evolution

Mixed Model with Correction for Case-Control Ascertainment Increases Association Power

Tristan J Hayeck, Noah A Zaitlen, Po-Ru Loh, Bjarni Vilhjalmsson, Samuela Pollack, Alexander Gusev, Jian Yang, Guo-Bo Chen, Michael E Goddard, Peter M Visscher, Nick Patterson, Alkes L Price

Journal article  |  2015  |  The American Journal of Human Genetics

A computationally efficient algorithm for genomic prediction using a Bayesian model

Tingting Wang, Yi-Ping Phoebe Chen, Michael E Goddard, Theo HE Meuwissen, Kathryn E Kemper, Ben J Hayes

Journal article  |  2015  |  Genetics Selection Evolution

Improved precision of QTL mapping using a nonlinear Bayesian method in a multi-breed population leads to greater accuracy of across-breed genomic predictions

Kathryn E Kemper, Coralie M Reich, Philip J Bowman, Christy J vander Jagt, Amanda J Chamberlain, Brett A Mason, Benjamin J Hayes, Michael E Goddard

Journal article  |  2015  |  Genetics Selection Evolution

Non-additive genetic variation in growth, carcass and fertility traits of beef cattle

Sunduimijid Bolormaa, Jennie E Pryce, Yuandan Zhang, Antonio Reverter, William Barendse, Ben J Hayes, Michael E Goddard

Journal article  |  2015  |  Genetics Selection Evolution

How old are quantitative trait loci and how widely do they segregate?

KE Kemper, BJ Hayes, HD Daetwyler, ME Goddard

Journal article  |  2015  |  Journal of Animal Breeding and Genetics

Simultaneous Discovery, Estimation and Prediction Analysis of Complex Traits Using a Bayesian Mixture Model

Gerhard Moser, Sang Hong Lee, Ben J Hayes, Michael E Goddard, Naomi R Wray, Peter M Visscher

Journal article  |  2015  |  PLOS Genetics

Dominance Genetic Variation Contributes Little to the Missing Heritability for Human Complex Traits

Zhihong Zhu, Andrew Bakshi, Anna AE Vinkhuyzen, Gibran Hemani, Sang Hong Lee, Ilja M Nolte, Jana V van Vliet-Ostaptchouk, Harold Snieder, Tonu Esko, Lili Milani, Reedik Maegi, Andres Metspalu, William G Hill, Bruce S Weir, Michael E Goddard, Peter M Visscher, Jian Yang

Journal article  |  2015  |  The American Journal of Human Genetics

Genetic studies of body mass index yield new insights for obesity biology

Adam E Locke, Bratati Kahali, Sonja I Berndt, Anne E Justice, Tune H Pers, Felix R Day, Corey Powell, Sailaja Vedantam, Martin L Buchkovich, Jian Yang, Damien C Croteau-Chonka, Tonu Esko, Tove Fall, Teresa Ferreira, Stefan Gustafsson, Zoltan Kutalik, Jian'an Luan, Reedik Maegi, Joshua C Randall, Thomas W Winkler, et al.

Journal article  |  2015  |  Nature

Psychiatric genome-wide association study analyses implicate neuronal, immune and histone pathways

Colm O'Dushlaine, Lizzy Rossin, Phil H Lee, Laramie Duncan, Neelroop N Parikshak, Stephen Newhouse, Stephan Ripke, Benjamin M Neale, Shaun M Purcell, Danielle Posthuma, John I Nurnberger, S Hong Lee, Stephen V Faraone, Roy H Perlis, Bryan J Mowry, Anita Thapar, Michael E Goddard, John S Witte, Devin Absher, Ingrid Agartz, et al.

Journal article  |  2015  |  Nature Neuroscience

A General Unified Framework to Assess the Sampling Variance of Heritability Estimates Using Pedigree or Marker-Based Relationships

Peter M Visscher, Michael E Goddard

Journal article  |  2015  |  Genetics

The Effects of Demography and Long-Term Selection on the Accuracy of Genomic Prediction with Sequence Data

Iona M MacLeod, Ben J Hayes, Michael E Goddard

Journal article  |  2014  |  Genetics

The Genetic Architecture of Climatic Adaptation of Tropical Cattle

Laercio R Porto-Neto, Antonio Reverter, Kishore C Prayaga, Eva KF Chan, David J Johnston, Rachel J Hawken, Geoffry Fordyce, Jose Fernando Garcia, Tad S Sonstegard, Sunduimijid Bolormaa, Michael E Goddard, Heather M Burrow, John M Henshall, Sigrid A Lehnert, William Barendse

Journal article  |  2014  |  PLoS ONE

Identification of genomic regions associated with inbreeding depression in Holstein and Jersey dairy cattle

Jennie E Pryce, Mekonnen Haile-Mariam, Michael E Goddard, Ben J Hayes

Journal article  |  2014  |  Genetics Selection Evolution

Defining the role of common variation in the genomic and biological architecture of adult human height

Andrew R Wood, Tonu Esko, Jian Yang, Sailaja Vedantam, Tune H Pers, Stefan Gustafsson, Audrey Y Chun, Karol Estrada, Jian'an Luan, Zoltan Kutalik, Najaf Amin, Martin L Buchkovich, Damien C Croteau-Chonka, Felix R Day, Yanan Duan, Tove Fall, Rudolf Fehrmann, Teresa Ferreira, Anne U Jackson, Juha Karjalainen, et al.

Journal article  |  2014  |  Nature Genetics

Copy number variation in the horse genome.

Sharmila Ghosh, Zhipeng Qu, Pranab J Das, Erica Fang, Rytis Juras, E Gus Cothran, Sue McDonell, Daniel G Kenney, Teri L Lear, David L Adelson, Bhanu P Chowdhary, Terje Raudsepp

Conference Proceedings  |  2014  |  Proceedings of the 9th World Congress on Genetics Applied to Livestock Production

We constructed a 400K WG tiling oligoarray for the horse and applied it for the discovery of copy number variations (CNVs) in 38 n..

Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels (vol 95, pg 4114, 2012)

M Erbe, BJ Hayes, LK Matukumalli, S Goswami, PJ Bowman, CM Reich, BA Mason, ME Goddard

Journal article  |  2014  |  Journal of Dairy Science

Next generation modeling in GWAS: comparing different genetic architectures

Evangelina Lopez de Maturana, Noelia Ibanez-Escriche, Oscar Gonzalez-Recio, Gaelle Marenne, Hossein Mehrban, Stephen J Chanock, Michael E Goddard, Nuria Malats

Journal article  |  2014  |  Human Genetics

A single-step genomic model with direct estimation of marker effects

Z Liu, ME Goddard, F Reinhardt, R Reents

Journal article  |  2014  |  Journal of Dairy Science

The use of epigenetic phenomena for the improvement of sheep and cattle

Michael E Goddard, Emma Whitelaw

Journal article  |  2014  |  Frontiers in Genetics

Estimation of genomic breeding values for residual feed intake in a multibreed cattle population

M Khansefid, JE Pryce, S Bolormaa, SP Miller, Z Wang, C Li, ME Goddard

Journal article  |  2014  |  Journal of Animal Science

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

Hans D Daetwyler, Aurelien Capitan, Hubert Pausch, Paul Stothard, Rianne Van Binsbergen, Rasmus F Brondum, Xiaoping Liao, Anis Djari, Sabrina C Rodriguez, Cecile Grohs, Diane Esquerre, Olivier Bouchez, Marie-Noelle Rossignol, Christophe Klopp, Dominique Rocha, Sebastien Fritz, Andre Eggen, Phil J Bowman, David Coote, Amanda J Chamberlain, et al.

Journal article  |  2014  |  Nature Genetics

A marker-derived gene network reveals the regulatory role of PPARGC1A, HNF4G, and FOXP3 in intramuscular fat deposition of beef cattle

Y Ramayo-Caldas, MRS Fortes, NJ Hudson, LR Porto-Neto, S Bolormaa, W Barendse, M Kelly, SS Moore, ME Goddard, SA Lehnert, A Reverter

Journal article  |  2014  |  Journal of Animal Science

Genetic variants in mammary development, prolactin signalling and involution pathways explain considerable variation in bovine milk production and milk composition

Lesley-Ann Raven, Benjamin G Cocks, Michael E Goddard, Jennie E Pryce, Ben J Hayes

Journal article  |  2014  |  Genetics Selection Evolution

Statistical Power to Detect Genetic (Co)Variance of Complex Traits Using SNP Data in Unrelated Samples

Peter M Visscher, Gibran Hemani, Anna AE Vinkhuyzen, Guo-Bo Chen, Sang Hong Lee, Naomi R Wray, Michael E Goddard, Jian Yang

Journal article  |  2014  |  PLoS Genetics

Selection for complex traits leaves little or no classic signatures of selection

Kathryn E Kemper, Sarah J Saxton, Sunduimijid Bolormaa, Benjamin J Hayes, Michael E Goddard

Journal article  |  2014  |  BMC Genomics

A Multi-Trait, Meta-analysis for Detecting Pleiotropic Polymorphisms for Stature, Fatness and Reproduction in Beef Cattle

Sunduimijid Bolormaa, Jennie E Pryce, Antonio Reverter, Yuandan Zhang, William Barendse, Kathryn Kemper, Bruce Tier, Keith Savin, Ben J Hayes, Michael E Goddard

Journal article  |  2014  |  PLoS Genetics

Advantages and pitfalls in the application of mixed-model association methods

Jian Yang, Noah A Zaitlen, Michael E Goddard, Peter M Visscher, Alkes L Price

Journal article  |  2014  |  Nature Genetics

Estimation of SNP Heritability from Dense Genotype Data

Journal article  |  2013  |  American Journal of Human Genetics

Author reply to A commentary on Pitfalls of predicting complex traits from SNPs

Naomi R Wray, Jian Yang, Ben J Hayes, Alkes L Price, Michael E Goddard, Peter M Visscher

Journal article  |  2013  |  Nature Reviews Genetics

Evidence for pleiotropism and recent selection in the PLAG1 region in Australian Beef cattle

MRS Fortes, K Kemper, S Sasazaki, A Reverter, JE Pryce, W Barendse, R Bunch, R McCulloch, B Harrison, S Bolormaa, YD Zhang, RJ Hawken, ME Goddard, SA Lehnert

Journal article  |  2013  |  Animal Genetics

Detection of quantitative trait loci in Bos indicus and Bos taurus cattle using genome-wide association studies

Sunduimijid Bolormaa, Jennie E Pryce, Kathryn E Kemper, Ben J Hayes, Yuandan Zhang, Bruce Tier, William Barendse, Antonio Reverter, Mike E Goddard

Journal article  |  2013  |  Genetics Selection Evolution

Additive Genetic Variation in Schizophrenia Risk Is Shared by Populations of African and European Descent

Teresa R de Candia, S Hong Lee, Jian Yang, Brian L Browning, Pablo V Gejman, Douglas F Levinson, Bryan J Mowry, John K Hewitt, Michael E Goddard, Michael C O'Donovan, Shaun M Purcell, Danielle Posthuma, Peter M Visscher, Naomi R Wray, Matthew C Keller

Journal article  |  2013  |  American Journal of Human Genetics

Inferring Demography from Runs of Homozygosity in Whole-Genome Sequence, with Correction for Sequence Errors

Iona M MacLeod, Denis M Larkin, Harris A Lewin, Ben J Hayes, Mike E Goddard

Journal article  |  2013  |  Molecular Biology and Evolution

Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs

S Hong Lee, Stephan Ripke, Benjamin M Neale, Stephen V Faraone, Shaun M Purcell, Roy H Perlis, Bryan J Mowry, Anita Thapar, Michael E Goddard, John S Witte, Devin Absher, Ingrid Agartz, Huda Akil, Farooq Amin, Ole A Andreassen, Adebayo Anjorin, Richard Anney, Verneri Anttila, Dan E Arking, Philip Asherson, et al.

Journal article  |  2013  |  Nature Genetics

Accuracy of prediction of genomic breeding values for residual feed intake and carcass and meat quality traits in Bos taurus, Bos indicus, and composite beef cattle

S Bolormaa, JE Pryce, K Kemper, K Savin, BJ Hayes, W Barendse, Y Zhang, CM Reich, BA Mason, RJ Bunch, BE Harrison, A Reverter, RM Herd, B Tier, H-U Graser, ME Goddard

Journal article  |  2013  |  Journal of Animal Science

Pitfalls of predicting complex traits from SNPs

Naomi R Wray, Jian Yang, Ben J Hayes, Alkes L Price, Michael E Goddard, Peter M Visscher

Journal article  |  2013  |  Nature Reviews Genetics

Adaptation of gastrointestinal nematode parasites to host genotype: single locus simulation models

Kathryn E Kemper, Michael E Goddard, Stephen C Bishop

Journal article  |  2013  |  Genetics Selection Evolution

Kernel methods and haplotypes used in selection of sparse DNA markers for protein yield in dairy cattle

Sylvia Young, Michael E Goddard, Jennie E Pryce, Guang Deng

Journal article  |  2013  |  Mathematical Biosciences

The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptation

Ben J Hayes, Harris A Lewin, Michael E Goddard

Journal article  |  2013  |  Trends in Genetics

Prospects for genomic selection in forage plant species

Benjamin J Hayes, Noel OI Cogan, Luke W Pembleton, Michael E Goddard, Junping Wang, German C Spangenberg, John W Forster

Journal article  |  2013  |  Plant Breeding

Estimation and partitioning of polygenic variation captured by common SNPs for Alzheimer's disease, multiple sclerosis and endometriosis

S Hong Lee, Denise Harold, Dale R Nyholt, Michael E Goddard, Krina T Zondervan, Julie Williams, Grant W Montgomery, Naomi R Wray, Peter M Visscher

Journal article  |  2013  |  Human Molecular Genetics

Inferring the recent ancestry of myostatin alleles affecting muscle mass in cattle

BA O'Rourke, PL Greenwood, PF Arthur, ME Goddard

Journal article  |  2013  |  Animal Genetics

Causal relationship between obesity and vitamin D status: bi-directional Mendelian randomization analysis of multiple cohorts.

Karani S Vimaleswaran, Diane J Berry, Chen Lu, Emmi Tikkanen, Stefan Pilz, Linda T Hiraki, Jason D Cooper, Zari Dastani, Rui Li, Denise K Houston, Andrew R Wood, Karl Michaëlsson, Liesbeth Vandenput, Lina Zgaga, Laura M Yerges-Armstrong, Mark I McCarthy, Josée Dupuis, Marika Kaakinen, Marcus E Kleber, Karen Jameson, et al.

Journal article  |  2013  |  PLoS Medicine

BACKGROUND: Obesity is associated with vitamin D deficiency, and both are areas of active public health concern. We explored the c..

Will Sequence SNP Data Improve The Accuracy Of Genomic Prediction In The Presence Of Long Term Selection?

IM Macleod, BJ Hayes, ME Goddard

Conference Proceedings  |  2013  |  Proceedings of the Association for the Advancement of Animal Breeding & Genetics 20th Conference

Estimation and Partition of Heritability in Human Populations Using Whole-Genome Analysis Methods

Anna AE Vinkhuyzen, Naomi R Wray, Jian Yang, Michael E Goddard, Peter M Visscher

Journal article  |  2013  |  Annual Review of Genetics

Accelerating Improvement of Livestock with Genomic Selection

Theo Meuwissen, Ben Hayes, Mike Goddard

Book Chapter  |  2013  |  Annual Review of Animal Biosciences

Genome-Wide Complex Trait Analysis (GCTA): Methods, Data Analyses, and Interpretations

Jian Yang, Sang Hong Lee, Michael E Goddard, Peter M Visscher

Journal article  |  2013  |  Methods in Molecular Biology

Genome-wide complex trait analysis (GCTA): methods, data analyses, and interpretations.

Jian Yang, Sang Hong Lee, Michael E Goddard, Peter M Visscher

Journal article  |  2013  |  Methods in Molecular Biology

Estimating genetic variance is traditionally performed using pedigree analysis. Using high-throughput DNA marker data measured acr..

Genomic regions associated with differences in fat percentage in milk between Holstein and Jersey cattle

KE Kemper, B Hayes, ME Goddard

Conference Proceedings  |  2013  |  Proceedings of the Association for the Advancement of Animal Breeding and Genetics

Effect of prior distributions on accuracy of genomic breeding values for two dairy traits

Ezequiel L Nicolazzi, Riccardo Negrini, Amanda J Chamberlain, Michael E Goddard, Paolo Ajmone Marsan, Ben J Hayes

Journal article  |  2013  |  Italian Journal of Animal Science

Genetic architecture of body size in mammals.

KE Kemper, PM Visscher, ME Goddard

Journal article  |  2012  |  Genome biology

Understanding and predicting complex traits: knowledge from cattle

Kathryn E Kemper, Mike E Goddard

Journal article  |  2012  |  Human Molecular Genetics

FTO genotype is associated with phenotypic variability of body mass index

Jian Yang, Ruth JF Loos, Joseph E Powell, Sarah E Medland, Elizabeth K Speliotes, Daniel I Chasman, Lynda M Rose, Gudmar Thorleifsson, Valgerdur Steinthorsdottir, Reedik Maegi, Lindsay Waite, Albert Vernon Smith, Laura M Yerges-Armstrong, Keri L Monda, David Hadley, Anubha Mahajan, Guo Li, Karen Kapur, Veronique Vitart, Jennifer E Huffman, et al.

Journal article  |  2012  |  Nature

Genome position specific priors for genomic prediction

Rasmus Froberg Brondum, Guosheng Su, Mogens Sando Lund, Philip J Bowman, Michael E Goddard, Benjamin J Hayes

Journal article  |  2012  |  BMC Genetics

Estimation of pleiotropy between complex diseases using single-nucleotide polymorphism-derived genomic relationships and restricted maximum likelihood

SH Lee, J Yang, ME Goddard, PM Visscher, NR Wray

Journal article  |  2012  |  Bioinformatics

Comparing linkage and association analyses in sheep points to a better way of doing GWAS

Kathryn E Kemper, Hans D Daetwyler, Peter M Visscher, Michael E Goddard

Journal article  |  2012  |  Genetics Research

Long-term selection strategies for complex traits using high-density genetic markers

KE Kemper, RJ Bowman, JE Pryce, BJ Hayes, ME Goddard

Journal article  |  2012  |  Journal of Dairy Science

Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels

M Erbe, BJ Hayes, LK Matukumalli, S Goswami, PJ Bowman, CM Reich, BA Mason, ME Goddard

Journal article  |  2012  |  Journal of Dairy Science

Estimating the proportion of variation in susceptibility to schizophrenia captured by common SNPs (vol 44, pg 247, 2012)

S Hong Lee, Teresa R DeCandia, Stephan Ripke, Jian Yang, Patrick F Sullivan, Michael E Goddard, Matthew C Keller, Peter M Visscher, Naomi R Wray

Journal article  |  2012  |  Nature Genetics

Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle

Denis M Larkin, Hans D Daetwyler, Alvaro G Hernandez, Chris L Wright, Lorie A Hetrick, Lisa Boucek, Sharon L Bachman, Mark R Band, Tatsiana V Akraiko, Miri Cohen-Zinder, Jyothi Thimmapuram, Iona M Macleod, Timothy T Harkins, Jennifer E McCague, Michael E Goddard, Ben J Hayes, Harris A Lewin

Journal article  |  2012  |  Proceedings of the National Academy of Sciences of the United States of America

Evidence-based psychiatric genetics, AKA the false dichotomy between common and rare variant hypotheses

PM Visscher, ME Goddard, EM Derks, NR Wray

Journal article  |  2012  |  Molecular Psychiatry

Genome-Wide Association Studies and Linkage Disequilibrium in Cattle

ME Goddard, BJ Hayes

Book Chapter  |  2012

A Better Coefficient of Determination for Genetic Profile Analysis

Sang Hong Lee, Michael E Goddard, Naomi R Wray, Peter M Visscher

Journal article  |  2012  |  Genetic Epidemiology

Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits

Jian Yang, Teresa Ferreira, Andrew P Morris, Sarah E Medland, Pamela AF Madden, Andrew C Heath, Nicholas G Martin, Grant W Montgomery, Michael N Weedon, Ruth J Loos, Timothy M Frayling, Mark I McCarthy, Joel N Hirschhorn, Michael E Goddard, Peter M Visscher

Journal article  |  2012  |  Nature Genetics

Estimating the proportion of variation in susceptibility to schizophrenia captured by common SNPs

S Hong Lee, Teresa R DeCandia, Stephan Ripke, Jian Yang, Patrick F Sullivan, Michael E Goddard, Matthew C Keller, Peter M Visscher, Naomi R Wray

Journal article  |  2012  |  Nature Genetics

Genetic contributions to stability and change in intelligence from childhood to old age

Ian J Deary, Jian Yang, Gail Davies, Sarah E Harris, Albert Tenesa, David Liewald, Michelle Luciano, Lorna M Lopez, Alan J Gow, Janie Corley, Paul Redmond, Helen C Fox, Suzanne J Rowe, Paul Haggarty, Geraldine McNeill, Michael E Goddard, David J Porteous, Lawrence J Whalley, John M Starr, Peter M Visscher

Journal article  |  2012  |  Nature

Validation of single nucleotide polymorphisms associated with milk production traits in dairy cattle

AJ Chamberlain, BJ Hayes, K Savin, S Bolormaa, HC McPartlan, PJ Bowman, C Van der Jagt, S MacEachern, ME Goddard

Journal article  |  2012  |  Journal of Dairy Science

Genetic architecture of body size in mammals

Kathryn E Kemper, Peter M Visscher, Michael E Goddard

Journal article  |  2012  |  Genome Biology

Uses of genomics in livestock agriculture

ME Goddard

Journal article  |  2012  |  Animal Production Science

Next generation sequencing of African and Indicine cattle to identify single nucleotide polymorphisms

W Barris, BE Harrison, S McWilliam, RJ Bunch, ME Goddard, W Barendse

Journal article  |  2012  |  Animal Production Science

Novel strategies to minimize progeny inbreeding while maximizing genetic gain using genomic information

JE Pryce, BJ Hayes, ME Goddard

Journal article  |  2012  |  Journal of Dairy Science

Genetic architecture of body size in mammals

Kathryn E Kemper, Peter M Visscher, Michael E Goddard

Journal article  |  2012  |  Genome Biology

Design and phenotyping procedures for recording wool, skin, parasite resistance, growth, carcass yield and quality traits of the SheepGENOMICS mapping flock

Jason D White, Peter G Allingham, Chris M Gorman, David L Emery, Philip Hynd, John Owens, Amy Bell, Jason Siddell, Greg Harper, Ben J Hayes, Hans D Daetwyler, Jonathan Usmar, Mike E Goddard, John M Henshall, Sonja Dominik, Heather Brewer, Julius HJ van der Werf, Frank W Nicholas, Robyn Warner, Chris Hofmyer, et al.

Journal article  |  2012  |  Animal Production Science

Identifying candidate genes affecting milk production traits by combining gene expression studies and genome wide association studies. Combining microarrays and GWAS

C VANDER JAGT, L Raven, G Cocks, ME Goddard

Conference Proceedings  |  2012  |  Proceedings of the 5th Australasian Dairy Science Symposium

Using the genomic relationship matrix to predict the accuracy of genomic selection

ME Goddard, BJ Hayes, THE Meuwissen

Journal article  |  2011  |  Journal of Animal Breeding and Genetics

Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution

Iris M Heid, Anne U Jackson, Joshua C Randall, Thomas W Winkler, Lu Qi, Valgerdur Steinthorsdottir, Gudmar Thorleifsson, M Carola Zillikens, Elizabeth K Speliotes, Reedik Maegi, Tsegaselassie Workalemahu, Charles C White, Nabila Bouatia-Naji, Tamara B Harris, Sonja I Berndt, Erik Ingelsson, Cristen J Willer, Michael N Weedon, Jian'an Luan, Sailaja Vedantam, et al.

Journal article  |  2011  |  Nature Genetics

Genome-wide association studies establish that human intelligence is highly heritable and polygenic

G Davies, A Tenesa, A Payton, J Yang, SE Harris, D Liewald, X Ke, S Le Hellard, A Christoforou, M Luciano, K McGhee, L Lopez, AJ Gow, J Corley, P Redmond, HC Fox, P Haggarty, LJ Whalley, G McNeill, ME Goddard, et al.

Journal article  |  2011  |  Molecular Psychiatry

Quantification of Inbreeding Due to Distant Ancestors and Its Detection Using Dense Single Nucleotide Polymorphism Data

Matthew C Keller, Peter M Visscher, Michael E Goddard

Journal article  |  2011  |  Genetics

Imputation of Missing Genotypes From Sparse to High Density Using Long-Range Phasing

Hans D Daetwyler, George R Wiggans, Ben J Hayes, John A Woolliams, Mike E Goddard

Conference Proceedings  |  2011  |  Proceedings of the 9th World Congress on Genetics Applied to Livestock Production

A genome-wide association study of meat and carcass traits in Australian cattle

S Bolormaa, LR Porto Neto, YD Zhang, RJ Bunch, BE Harrison, ME Goddard, W Barendse

Journal article  |  2011  |  Journal of Animal Science

Population Structure Can Inflate SNP-Based Heritability Estimates Response

Michael E Goddard, Hong Lee, Jian Yang, Naomi R Wray, Peter M Visscher

Journal article  |  2011  |  AMERICAN JOURNAL OF HUMAN GENETICS

Response to Browning and Browning.

Michael E Goddard, S Hong Lee, Jian Yang, Naomi R Wray, Peter M Visscher

Journal article  |  2011  |  American Journal of Human Genetics

Detection of chromosome segments of zebu and taurine origin and their effect on beef production and growth

S Bolormaa, BJ Hayes, RJ Hawken, Y Zhang, A Reverter, ME Goddard

Conference Proceedings  |  2011  |  Proceedings of the 9th World Congress on Genetics Applied to Livestock Production

Genomic inflation factors under polygenic inheritance

Jian Yang, Michael N Weedon, Shaun Purcell, Guillaume Lettre, Karol Estrada, Cristen J Willer, Albert V Smith, Erik Ingelsson, Jeffrey R O'Connell, Massimo Mangino, Reedik Maegi, Pamela A Madden, Andrew C Heath, Dale R Nyholt, Nicholas G Martin, Grant W Montgomery, Timothy M Frayling, Joel N Hirschhorn, Mark I McCarthy, Michael E Goddard, et al.

Journal article  |  2011  |  European Journal of Human Genetics

Detection of chromosome segments of zebu and taurine origin and their effect on beef production and growth1

S Bolormaa, BJ Hayes, RJ Hawken, Y Zhang, A Reverter, ME Goddard

Journal article  |  2011  |  Journal of Animal Science

Genome-wide association studies for feedlot and growth traits in cattle

S Bolormaa, BJ Hayes, K Savin, R Hawken, W Barendse, PF Arthur, RM Herd, ME Goddard

Journal article  |  2011  |  Journal of Animal Science

The distribution of SNP marker effects for faecal worm egg count in sheep, and the feasibility of using these markers to predict genetic merit for resistance to worm infections

Kathryn E Kemper, David L Emery, Stephen C Bishop, Hutton Oddy, Benjamin J Hayes, Sonja Dominik, John M Henshall, Michael E Goddard

Journal article  |  2011  |  Genetics Research

Human population dispersal "Out of Africa'' estimated from linkage disequilibrium and allele frequencies of SNPs

Brian P McEvoy, Joseph E Powell, Michael E Goddard, Peter M Visscher

Journal article  |  2011  |  Genome Research

Genome partitioning of genetic variation for complex traits using common SNPs

Jian Yang, Teri A Manolio, Louis R Pasquale, Eric Boerwinkle, Neil Caporaso, Julie M Cunningham, Mariza de Andrade, Bjarke Feenstra, Eleanor Feingold, M Geoffrey Hayes, William G Hill, Maria Teresa Landi, Alvaro Alonso, Guillaume Lettre, Peng Lin, Hua Ling, William Lowe, Rasika A Mathias, Mads Melbye, Elizabeth Pugh, et al.

Journal article  |  2011  |  Nature Genetics

Cattle gain stature

Peter M Visscher, Michael E Goddard

Journal article  |  2011  |  Nature Genetics

Short communication: Genomic selection using a multi-breed, across-country reference population

JE Pryce, B Gredler, S Bolormaa, PJ Bowman, C Egger-Danner, C Fuerst, R Emmerling, J Soelkner, ME Goddard, BJ Hayes

Journal article  |  2011  |  Journal of Dairy Science

Estimating Missing Heritability for Disease from Genome-wide Association Studies

Sang Hong Lee, Naomi R Wray, Michael E Goddard, Peter M Visscher

Journal article  |  2011  |  American Journal of Human Genetics

Polymorphic Regions Affecting Human Height Also Control Stature in Cattle

Jennie E Pryce, Ben J Hayes, Sunduimijid Bolormaa, Michael E Goddard

Journal article  |  2011  |  Genetics

Genome-Wide Association Analysis Identifies Variants Associated with Nonalcoholic Fatty Liver Disease That Have Distinct Effects on Metabolic Traits

Elizabeth K Speliotes, Laura M Yerges-Armstrong, Jun Wu, Ruben Hernaez, Lauren J Kim, Cameron D Palmer, Vilmundur Gudnason, Gudny Eiriksdottir, Melissa E Garcia, Lenore J Launer, Michael A Nalls, Jeanne M Clark, Braxton D Mitchell, Alan R Shuldiner, Johannah L Butler, Marta Tomas, Udo Hoffmann, Shih-Jen Hwang, Joseph M Massaro, Christopher J O'Donnell, et al.

Journal article  |  2011  |  PLoS Genetics

The value of using DNA markers for beef bull selection in the seedstock sector

AL Van Eenennaam, JHJ van der Werf, ME Goddard

Journal article  |  2011  |  Journal of Animal Science

GCTA: A Tool for Genome-wide Complex Trait Analysis

Jian Yang, S Hong Lee, Michael E Goddard, Peter M Visscher

Journal article  |  2011  |  American Journal of Human Genetics

Genetics: Cattle Genomics

BJ Hayes, B Cocks, ME Goddard

Book Chapter  |  2011

A Commentary on 'Common SNPs Explain a Large Proportion of the Heritability for Human Height' by Yang et al. (2010)

Peter M Visscher, Jian Yang, Michael E Goddard

Journal article  |  2010  |  Twin Research and Human Genetics

The use of communal rearing of families and DNA pooling in aquaculture genomic selection schemes

Anna K Sonesson, Theo HE Meuwissen, Michael E Goddard

Journal article  |  2010  |  Genetics Selection Evolution

Reconciling the analysis of IBD and IBS in complex trait studies

Joseph E Powell, Peter M Visscher, Michael E Goddard

Journal article  |  2010  |  Nature Reviews Genetics

Deterministic models of breeding scheme designs that incorporate genomic selection

JE Pryce, ME Goddard, HW Raadsma, BJ Hayes

Journal article  |  2010  |  Journal of Dairy Science

Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution

Iris M Heid, Anne U Jackson, Joshua C Randall, Thomas W Winkler, Lu Qi, Valgerdur Steinthorsdottir, Gudmar Thorleifsson, M Carola Zillikens, Elizabeth K Speliotes, Reedik Maegi, Tsegaselassie Workalemahu, Charles C White, Nabila Bouatia-Naji, Tamara B Harris, Sonja I Berndt, Erik Ingelsson, Cristen J Willer, Michael N Weedon, Jianan Luan, Sailaja Vedantam, et al.

Journal article  |  2010  |  Nature Genetics

Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index

Elizabeth K Speliotes, Cristen J Willer, Sonja I Berndt, Keri L Monda, Gudmar Thorleifsson, Anne U Jackson, Hana Lango Allen, Cecilia M Lindgren, Jian'an Luan, Reedik Maegi, Joshua C Randall, Sailaja Vedantam, Thomas W Winkler, Lu Qi, Tsegaselassie Workalemahu, Iris M Heid, Valgerdur Steinthorsdottir, Heather M Stringham, Michael N Weedon, Eleanor Wheeler, et al.

Journal article  |  2010  |  Nature Genetics

Genome-wide association and genomic selection in animal breeding

Ben Hayes, Mike Goddard

Journal article  |  2010  |  Genome

Hundreds of variants clustered in genomic loci and biological pathways affect human height

Hana Lango Allen, Karol Estrada, Guillaume Lettre, Sonja I Berndt, Michael N Weedon, Fernando Rivadeneira, Cristen J Willer, Anne U Jackson, Sailaja Vedantam, Soumya Raychaudhuri, Teresa Ferreira, Andrew R Wood, Robert J Weyant, Ayellet V Segre, Elizabeth K Speliotes, Eleanor Wheeler, Nicole Soranzo, Ju-Hyun Park, Jian Yang, Daniel Gudbjartsson, et al.

Journal article  |  2010  |  Nature

Genomic selection in livestock populations

Michael E Goddard, Ben J Hayes, Theo HE Meuwissen

Journal article  |  2010  |  Genetics Research

Genetic Architecture of Complex Traits and Accuracy of Genomic Prediction: Coat Colour, Milk-Fat Percentage, and Type in Holstein Cattle as Contrasting Model Traits

Ben J Hayes, Jennie Pryce, Amanda J Chamberlain, Phil J Bowman, Mike E Goddard

Journal article  |  2010  |  PLoS Genetics

The Use of Family Relationships and Linkage Disequilibrium to Impute Phase and Missing Genotypes in Up to Whole-Genome Sequence Density Genotypic Data

Theo Meuwissen, Mike Goddard

Journal article  |  2010  |  Genetics

Multivariate analysis of a genome-wide association study in dairy cattle

S Bolormaa, JE Pryce, BJ Hayes, ME Goddard

Journal article  |  2010  |  Journal of Dairy Science

A validated genome-wide association study in 2 dairy cattle breeds for milk production and fertility traits using variable length haplotypes

JE Pryce, S Bolormaa, AJ Chamberlain, PJ Bowman, K Savin, ME Goddard, BJ Hayes

Journal article  |  2010  |  Journal of Dairy Science

Common SNPs explain a large proportion of the heritability for human height

Jian Yang, Beben Benyamin, Brian P McEvoy, Scott Gordon, Anjali K Henders, Dale R Nyholt, Pamela A Madden, Andrew C Heath, Nicholas G Martin, Grant W Montgomery, Michael E Goddard, Peter M Visscher

Journal article  |  2010  |  Nature Genetics

Using the realized relationship matrix to disentangle confounding factors for the estimation of genetic variance components of complex traits

Sang Hong Lee, Michael E Goddard, Peter M Visscher, Julius HJ van der Werf

Journal article  |  2010  |  Genetics Selection Evolution

Accurate Prediction of Genetic Values for Complex Traits by Whole-Genome Resequencing

Theo Meuwissen, Mike Goddard

Journal article  |  2010  |  Genetics

Copy Number Variation and Transposable Elements Feature in Recent, Ongoing Adaptation at the Cyp6g1 Locus

Joshua M Schmidt, Robert T Good, Belinda Appleton, Jayne Sherrard, Greta C Raymant, Michael R Bogwitz, Jon Martin, Phillip J Daborn, Mike E Goddard, Philip Batterham, Charles Robin

Journal article  |  2010  |  PLoS Genetics

Genetic markers for lactation persistency in primiparous Australian dairy cows

JE Pryce, M Haile-Mariam, K Verbyla, PJ Bowman, ME Goddard, BJ Hayes

Journal article  |  2010  |  Journal of Dairy Science

Power of a genome scan to detect and locate quantitative trait loci in cattle using dense single nucleotide polymorphisms

IM MacLeod, BJ Hayes, KW Savin, AJ Chamberlain, HC McPartlan, ME Goddard

Journal article  |  2010  |  Journal of Animal Breeding and Genetics

Systems genetics: the added value of gene expression

Peter M Visscher, Michael E Goddard

Journal article  |  2010  |  HFSP Journal

The Genetic Interpretation of Area under the ROC Curve in Genomic Profiling

Naomi R Wray, Jian Yang, Michael E Goddard, Peter M Visscher

Journal article  |  2010  |  PLoS Genetics

Calculation of lifetime net income per year (LTNI/year) of Australian Holstein cows to validate the Australian profit ranking of their sires. 2. Validation of the Australian profit ranking of sires and test for genotype by environment interaction based on LTNI/year

M Haile-Mariam, PJ Bowman, ME Goddard

Journal article  |  2010  |  Animal Production Science

Breeding schemes for dairy cows under genomic selection - what can we do?

JE Pryce, ME Goddard, BJ Hayes

Conference Proceedings  |  2010  |  Proceedings of the 9th World Congress on Genetics Applied to Livestock Production

A simple model of worm adaptation to livestock bred for improved resistance to worms

KE Kemper, ME Goddard, SC Bishop

Conference Proceedings  |  2010  |  Proceedings of the 9th World Congress on Genetics Applied to Livestock Production

Calculation of lifetime net income per year (LTNI/year) of Australian Holstein cows to validate the Australian profit ranking of their sires. 1. Genetic analyses and prediction of LTNI/year for cows still in the herd

M Haile-Mariam, PJ Bowman, ME Goddard

Journal article  |  2010  |  Animal Production Science

Value of DNA information for beef bull selection

AL Van Eenennaam, JH van der Werf, ME Goddard

Conference Proceedings  |  2010  |  Proceedings of the 9th World Congress on Genetics Applied to Livestock Production

Multi-locus models of genetic risk of disease

Naomi R Wray, Michael E Goddard

Journal article  |  2010  |  Genome Medicine: medicine in the post-genomic era

Sensitivity of genomic selection to using different prior distributions.

Klara L Verbyla, Philip J Bowman, Ben J Hayes, Michael E Goddard

Journal article  |  2010  |  BMC Proceedings

UNLABELLED: Genomic selection describes a selection strategy based on genomic estimated breeding values (GEBV) predicted from dens..

Genomic selection in farm animal species - lessons learnt and future perspectives

ME Goddard, BJ Hayes, THE Meuwissen

Conference Proceedings  |  2010  |  Proceedings of the 9th World Congress on Genetics Applied to Livestock Production

The economics of using DNA markers for beef bull selection in the seedstock sector.

AL Van Eenennaam, JH van der Werf, ME Goddard

Journal article  |  2010  |  JOURNAL OF DAIRY SCIENCE

Preliminary genetic analyses of voluntarily supplied disease data in Australian dairy herds

M Haile-Mariam, ME Goddard

Journal article  |  2010  |  Animal Production Science

Whole genome sequence data: characteristics resulting from demography and sequencing errors

IM Macleod, BJ Hayes, ME Goddard

Conference Proceedings  |  2010  |  Proceedings of the 9th World Congress on Genetics Applied to Livestock Production

A Note on Permutation Tests for Genetic Association Analysis of Quantitative Traits When Variances Are Heterogeneous

Danielle Posthuma, Dirk-Jan de Koning, Conor Dolan, Michael E Goddard, Peter M Visscher

Journal article  |  2009  |  Genetic Epidemiology

Reliability of Genomic Predictions Across Multiple Populations

APW de Roos, BJ Hayes, ME Goddard

Journal article  |  2009  |  Genetics

A novel predictor of multilocus haplotype homozygosity: comparison with existing predictors

IM MacLeod, THE Meuwissen, BJ Hayes, ME Goddard

Journal article  |  2009  |  Genetics Research

LASSO with cross-validation for genomic selection

M Graziano Usai, Mike E Goddard, Ben J Hayes

Journal article  |  2009  |  Genetics Research

Accuracy of genomic breeding values in multi-breed dairy cattle populations

Ben J Hayes, Phillip J Bowman, Amanda C Chamberlain, Klara Verbyla, Mike E Goddard

Journal article  |  2009  |  Genetics Selection Evolution

Estimating Effects and Making Predictions from Genome-Wide Marker Data

Michael E Goddard, Naomi R Wray, Klara Verbyla, Peter M Visscher

Journal article  |  2009  |  Statistical Science

Accuracy of genomic selection using stochastic search variable selection in Australian Holstein Friesian dairy cattle

Klara L Verbyla, Ben J Hayes, Philip J Bowman, Michael E Goddard

Journal article  |  2009  |  Genetics Research

A Validated Genome Wide Association Study to Breed Cattle Adapted to an Environment Altered by Climate Change

Ben J Hayes, Phil J Bowman, Amanda J Chamberlain, Keith Savin, Curt P van Tassell, Tad S Sonstegard, Mike E Goddard

Journal article  |  2009  |  PLoS One

Gene by environment interactions for production traits in Australian dairy cattle

M Lillehammer, BJ Hayes, THE Meuwissen, ME Goddard

Journal article  |  2009  |  Journal of Dairy Science

Mapping genes for complex traits in domestic animals and their use in breeding programmes

Michael E Goddard, Ben J Hayes

Journal article  |  2009  |  Nature Reviews Genetics

Genetic evaluation of Australian dairy cattle for somatic cell scores using multi-trait random regression test-day model

KV Konstantinov, KT Beard, ME Goddard, JHJ Van der Werf

Journal article  |  2009  |  Journal of Animal Breeding and Genetics

Genomic selection: prediction of accuracy and maximisation of long term response

Mike Goddard

Journal article  |  2009  |  Genetica

Molecular evolution of the Bovini tribe (Bovidae, Bovinae): Is there evidence of rapid evolution or reduced selective constraint in Domestic cattle?

Sean MacEachern, John McEwan, Alan McCulloch, Andrew Mather, Keith Savin, Mike Goddard

Journal article  |  2009  |  BMC Genomics

Phylogenetic reconstruction and the identification of ancient polymorphism in the Bovini tribe (Bovidae, Bovinae)

Sean MacEachern, John McEwan, Mike Goddard

Journal article  |  2009  |  BMC Genomics

An examination of positive selection and changing effective population size in Angus and Holstein cattle populations (Bos taurus) using a high density SNP genotyping platform and the contribution of ancient polymorphism to genomic diversity in Domestic cattle

Sean MacEachern, Ben Hayes, John McEwan, Mike Goddard

Journal article  |  2009  |  BMC Genomics

Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds

Richard A Gibbs, Jeremy F Taylor, Curtis P Van Tassell, William Barendse, Kallye A Eversoie, Clare A Gill, Ronnie D Green, Debora L Hamernik, Steven M Kappes, Sigbjorn Lien, Lakshmi K Matukumalli, John C McEwan, Lynne V Nazareth, Robert D Schnabel, Jeremy F Taylor, George M Weinstock, David A Wheeler, Paolo Ajmone-Marsan, William Barendse, Paul J Boettcher, et al.

Journal article  |  2009  |  Science

Increased accuracy of artificial selection by using the realized relationship matrix. (vol 91, pg 47, 2009)

BJ Hayes, PM Visscher, ME Goddard

Journal article  |  2009  |  Genetics Research

A genome map of divergent artificial selection between Bos taurus dairy cattle and Bos taurus beef cattle

BJ Hayes, AJ Chamberlain, S Maceachern, K Savin, H McPartlan, I MacLeod, L Sethuraman, ME Goddard

Journal article  |  2009  |  Animal Genetics

Haemonchus contortus and Trichostrongylus colubriformis did not adapt to long-term exposure to sheep that were genetically resistant or susceptible to nematode infections

KE Kemper, RL Elwin, SC Bishop, ME Goddard, RR Woolaston

Journal article  |  2009  |  International Journal for Parasitology

Invited review: Genomic selection in dairy cattle: progress and challenges (vol 92, pg 433, 2009)

BJ Hayes, PJ Bowman, AJ Chamberlain, ME Goddard

Journal article  |  2009  |  Journal of Dairy Science

Invited review: Genomic selection in dairy cattle: Progress and challenges

BJ Hayes, PJ Bowman, AJ Chamberlain, ME Goddard

Journal article  |  2009  |  Journal of Dairy Science

Increased accuracy of artificial selection by using the realized relationship matrix

BJ Hayes, PM Visscher, ME Goddard

Journal article  |  2009  |  Genetics Research

QTL mapping for feed conversion efficiency on porcine chromosome 10 in an Australian commercial population

Y Chen, Y Zhang, I MACLEOD, R Kerr, KL Bunter, BJ Hayes, B Tier, HU Graser, BG Luxford, M GODDARD, C Moran

Conference Proceedings  |  2009  |  Proceedings of the Association for the Advancement of Animal Breeding and Genetics

Genomic selection based on dense genotypes inferred from sparse genotypes

M GODDARD, B Hayes

Conference Proceedings  |  2009  |  Proceedings of the Association for the advancement of animal breeding and genetics

A comparison between sheep bred for worm resistance and unselected controls when exposed to low larval challenge during summer

KE Kemper, J LARSEN, S Bishop, N ANDERSON, M GODDARD, J Greef, R Woodgate, L Karlsson

Conference Proceedings  |  2009  |  Proc AAABG

Genetic markers for lactation persistency in Australian dairy cows

J Pryce, M Haile-mariam, KL VERBYLA, P Bowman, M GODDARD, B Hayes

Conference Proceedings  |  2009  |  Proc AAABG

Validating and Increasing Profit from Dairy Bull Selection

B Malcolm, M Haile-Mariama, M Pryce, H Van der Werf, M Goddard

Report  |  2009

Using LASSO to estimate marker effects for Genomic Selection

Mario Graziano Usai, Mike E Goddard, Ben J Hayes

Journal article  |  2009  |  Italian Journal of Animal Science

Genome wide association studies for net feed intake, body weight and hip height in beef cattle

S Bolormaa, M GODDARD

Conference Proceedings  |  2009  |  Proc AAABG

Genotype by environment interaction between registered and commercial herds for dairy traits in Australia

M GODDARD

Conference Proceedings  |  2009  |  Proc AAABG

Criteria for selecting and predicting herdlife in dairy cattle

M Haile-Mariam, M GODDARD

Conference Proceedings  |  2009  |  AAABG Conference Proceedings

Accuracy of genomic selection: comparing theory and results

B Hayes, H Daetwyler, P Bowman, G Moser, B Tier, R Crump, M Khatkar, H Raadsma, M GODDARD

Conference Proceedings  |  2009  |  Proc AAABG

Fitness Traits in Animal Breeding Programs

Michael Goddard

Conference Proceedings  |  2009  |  ADAPTATION AND FITNESS IN ANIMAL POPULATIONS

Updated index weights for the Australian Profit Ranking in dairy cattle

J Pryce, J van der Werf, M Haile-Mariam, B MALCOLM, M GODDARD

Conference Proceedings  |  2009  |  proc AAABG

Association between Myostatin DNA markers and muscularity in Angus cattle

BA O'ROURKE, P Greenwood, P Arthur, M GODDARD

Conference Proceedings  |  2009  |  Proc AAABG

Fitness Traits in Animal Breeding Programs - Evolutionary and Breeding Perspectives on Genetic Resource Management

M GODDARD

Book Chapter  |  2009

Genotype by Environment Interaction for Fertility, Survival, and Milk Production Traits in Australian Dairy Cattle

M Haile-Mariam, MJ Carrick, ME Goddard

Journal article  |  2008  |  Journal of Dairy Science

Use of gene expression data for predicting continuous phenotypes for animal production and breeding

N Robinson, M Goddard, B Hayes

Journal article  |  2008  |  Animal

Predicting Unobserved Phenotypes for Complex Traits from Whole-Genome SNP Data

Sang Hong Lee, Julius HJ van der Werf, Ben J Hayes, Michael E Goddard, Peter M Visscher

Journal article  |  2008  |  PLoS Genetics

Technical note: Prediction of breeding values using marker-derived relationship matrices

BJ Hayes, ME Goddard

Journal article  |  2008  |  Journal of Animal Science

Quantitative trait locus-by-environment interaction for milk yield traits on Bos taurus autosome 6

Marie Lillehammer, Mike E Goddard, Heidi Nilsen, Erling Sehested, Hanne Gro Olsen, Sigbjorn Lien, Theo HE Meuwissen

Journal article  |  2008  |  Genetics

Linkage disequilibrium and persistence of phase in Holstein-Friesian, Jersey and Angus cattle

APW de Roos, BJ Hayes, RJ Spelman, ME Goddard

Journal article  |  2008  |  Genetics

Holstein-Friesian dairy cows under a predominantly grazing system: Interaction between genotype and environment (vol 91, pg 826, 2008)

WJ Fulkerson, TM Davison, SC Garcia, G Hough, ME Goddard, R Dobos, M Blockey

Journal article  |  2008  |  Journal of Dairy Science

Prediction of individual genetic risk of complex disease

Naomi R Wray, Michael E Goddard, Peter M Visscher

Journal article  |  2008  |  Current Opinion in Genetics and Development

Prediction of individual genetic risk of complex disease

Naomi R Wray, Michael E Goddard, Peter M Visscher

Journal article  |  2008  |  Current Opinion in Genetics and Development

Genetic and phenotypic parameters of lactations longer than 305 days (extended lactations)

M Haile-Mariam, ME Goddard

Journal article  |  2008  |  Animal

Holstein-Friesian dairy cows under a predominantly grazing system: Interaction between genotype and environment

WJ Fulkerson, TM Davison, SC Garcia, G Hough, ME Goddard, R Dobos, M Blockey

Journal article  |  2008  |  Journal of Dairy Science

Data and theory point to mainly additive genetic variance for complex traits

William G Hill, Michael E Goddard, Peter M Visscher

Journal article  |  2008  |  PLoS Genetics

Prediction of breeding values using marker-derived relationship matrices

M GODDARD, undefined HAYES

Journal article  |  2008  |  Journal of Animal Science

Genes influencing milk production traits predominantly affect one of four biological pathways

Amanda Jane Chamberlain, Helen Clare McPartlan, Michael Edward Goddard

Journal article  |  2008  |  Genetics Selection Evolution

The Use of High Density Genotyping in Animal Health

ME Goddard

Book Chapter  |  2008  |  Developments in Biologicals

Genomic selection

ME Goddard, BJ Hayes

Journal article  |  2007  |  Journal of Animal Breeding and Genetics

The number of loci that affect milk production traits in dairy cattle

Amanda Jane Chamberlain, Helen Clare McPartlan, Michael Edward Goddard

Journal article  |  2007  |  Genetics

Prediction of individual genetic risk to disease from genome-wide association studies

Naomi R Wray, Michael E Goddard, Peter M Visscher

Journal article  |  2007  |  Genome Research

Accuracy of marker-assisted selection with single markers and marker haplotypes in cattle

BJ Hayes, AJ Chamberlain, H McPartlan, I Macleod, L Sethuraman, ME Goddard

Journal article  |  2007  |  Genetics Research

Multipoint identity-by-descent prediction using dense markers to map quantitative trait loci and estimate effective population size

Theo HE Meuwissen, Mike E Goddard

Journal article  |  2007  |  Genetics

A practical approach for minimising inbreeding and maximising genetic gain in dairy cattle

Mekonnen Haile-Mariam, Phil J Bowman, Mike E Goddard

Journal article  |  2007  |  Genetics Selection Evolution

Empirical evaluation of selective DNA pooling to map QTL in dairy cattle using a half-sib design by comparison to individual genotyping and interval mapping

Maxy Mariasegaram, Nicholas Andrew Robinson, Michael Edward Goddard

Journal article  |  2007  |  Genetics Selection Evolution

Optimisation of marker assisted selection for abalone breeding programs

Ben Hayes, Matt Baranski, Mike E Goddard, Nick Robinson

Journal article  |  2007  |  AQUACULTURE

Recent human effective population size estimated from linkage disequilibrium

Albert Tenesa, Pau Navarro, Ben J Hayes, David L Duffy, Geraldine M Clarke, Mike E Goddard, Peter M Visscher

Journal article  |  2007  |  Genome Research

Predicting genomic breeding values within and between populations

BJ Hayes, APW De Roos, M GODDARD

Conference Proceedings  |  2007  |  Proceedings of the Seventeenth Conference of the Association for the Advancement of Animal Breeding and Genetics

Genetic variation at the myostatin locus

BA O'Rourke, BJ Hayes, PL Greenwood, PF Arthur, M GODDARD

Conference Proceedings  |  2007  |  Proceedings of the Seventeenth Conference of Association for the Advancement of Animal Breeding and Genetics

Genotype by calving system interaction for milk yield traits and calving interval in Holstein-Friesian cattle

M Haile-Mariam, M GODDARD

Conference Proceedings  |  2007  |  Meeting the Challenges for Pasture-Based Dairying

Use of dense DNA markers to measure chromosome segment homozygosity in dairy cattle

IM MACLEOD, BJ Hayes, AJ Chamberlain, KW Savin, H McPartlan, M Haile-Mariam, P Bowman, M GODDARD

Conference Proceedings  |  2007  |  Proceedings of the Seventeenth Conference of the Association for the Advancement of Animal Breeding and Genetics

Effect of data collection methods on the availability of calving ease, fertility and herd health data for evaluating Australian dairy cattle

M Haile-Mariam, E Schelfhorst, ME Goddard

Journal article  |  2007  |  Australian Journal of Experimental Agriculture

A review of the effects of dairy breed on feed conversion efficiency

C Grainger, M GODDARD

Conference Proceedings  |  2007  |  Meeting the Challenges for Pasture-Based Dairying

An alternative measure of fertility for genetic evaluation of dairy cattle

M Haile-Mariam, M GODDARD

Conference Proceedings  |  2007  |  Proceedings of the Seventeenth Conference of the Association for the Advancement of Animal Breeding and Genetics

Cross validation of QTL from linkage analysis and linkage disequilibrium analysis

DL HULETT, B Hayes, AJ Chamberlain, L Krishnan, H McPartlan, RM Herd, M GODDARD

Conference Proceedings  |  2007  |  Proceedings of the Seventeenth Conference of the Associationfor the Advancement of Animal Breeding and Genetics

Genomic selection for accelerated genetic gain in dairy cattle

BJ Hayes, M GODDARD

Conference Proceedings  |  2007  |  Meeting the Challenges for Pasture-Based Dairying

A Technical Manual Describing the Australian Profit Ranking index

B Malcolm, J Pryce, J van der Weerf, M HAILE-MARIAM, M Goddard

Report  |  2007

Testing the neutral theory of molecular evolution using genomic data: a comparison of the human and bovine transcriptome

S MacEachern, J McEwan, A Mather, A McCulloch, P Sunnucks, M Goddard

Journal article  |  2006  |  Genetics Selection Evolution

Quantification of cattle DNA using quantitative competitive PCR with sheep DNA as competitor

M Mariasegaram, NA Robinson, ME Goddard

Journal article  |  2006  |  Molecular and Cellular Probes

Estimation of additive and non-additive genetic effects on production traits and somatic cell scores in crosses among holstein-friesian, jersey and Australian red cattle

KV Konstantinov, KT Beard, M GODDARD

Conference Proceedings  |  2006  |  Proceedings of 8th World Congress on Genetics Applied to Livestock Production

Use of markers in linkage disequilibrium with QTL in breeding programs

BJ Hayes, AJ Chamberlain, M GODDARD

Conference Proceedings  |  2006  |  Proceedings of 8th World Congress on Genetics Aplied to Livestock Production

Positioning single nucleotide polymorphisms on an existing bovine map using a genetic algorithm and estimates of linkage disequilibium

SP Miller, M GODDARD

Conference Proceedings  |  2006  |  Proceedings of 8th World Congress on Genetics Applied to Livestock Production

Efficiency of dense bovine single-nucleotide polymorphisms to detect and position quantitative trait loci

I MACLEOD, BJ Hayes, M GODDARD

Conference Proceedings  |  2006  |  World Congress on Genetics Applied to Livestock Production

Can the same genetic markers be used in multiple breeds?

M GODDARD, B Hayes, H McPartlan, AJ Chamberlain

Conference Proceedings  |  2006  |  8th World Congress on Genetics Applied to Livestock Production

Testing marker assisted selection in a real breeding program

AJ Chamberlain, M GODDARD

Conference Proceedings  |  2006  |  Proceedings for 8th World Congress on Genetics Applied to Livestock Production

Artificial selection and maintenance of genetic variance in the global dairy cow population

S Brotherstone, M Goddard

Journal article  |  2005  |  Royal Society of London. Proceedings B. Biological Sciences

Estimation of genetic parameters for milk fat depression in dairy cattle

MPL Calus, MJ Carrick, RF Veerkamp, ME Goddard

Journal article  |  2005  |  Journal of Dairy Science

A method that predicts the genetic composition and inbreeding of the future Australian dairy herd

M HAILE-MARIAM, PJ BOWMAN, K BEARD, ME GODDARD

Conference Proceedings  |  2005  |  Proceedings of the Association for the Advancement of Animal Breeding and Genetics

Hidden costs of dystocia: fertility and long term survival in dairy cows

SEJ MCCLINTOCK, K BEARD, ME GODDARD, DJ JOHNSTON

Conference Proceedings  |  2005  |  Proceedings of Association for the Advancement of Animal Breeding and Genetics

Estimation of the distribution of QTL effects

AJ CHAMBERLAIN, THE MEUWISSEN, ME GODDARD

Conference Proceedings  |  2005  |  Proceedings of the Association for the Advancement of Animal Breeding Genetics

Calving traits and their relationship with production, conformation and workability traits in holstein-friesian cows

SEJ MCCLINTOCK, K BEARD, ME GODDARD

Conference Proceedings  |  2005  |  Proceedings of the Association for the Advancement of Animal Breeding and Genetics

The use of linkage disequilibrium to map quantitative trait loci

ME Goddard, THE Meuwissen

Journal article  |  2005  |  Australian Journal of Experimental Agriculture

Interactions between gestation length, calf size, dystocia and calf mortality

SEJ MCCLINTOCK, K BEARD, ME GODDARD, DJ JOHNSTON

Conference Proceedings  |  2005  |  Proceedings of Association for the Advancement of Animal Breeding and Genetics

Break-even cost of genotyping genetic mutations affecting economic traits in Australian pig enterprises

B Hayes, ME Goddard

Journal article  |  2004  |  Livestock Production Science

Prediction of the confidence interval of quantitative trait loci location

PM Visscher, ME Goddard

Journal article  |  2004  |  Behavior Genetics

Mapping multiple QTL using linkage disequilibrium and linkage analysis information and multitrait data

THE Meuwissen, ME Goddard

Journal article  |  2004  |  Genetics Selection Evolution

Bootstrapping of gene-expression data improves and controls the false discovery rate of differentially expressed genes

THE Meuwissen, ME Goddard

Journal article  |  2004  |  Genetics Selection Evolution

Genetic parameters of fertility traits and their correlation with production, type, workability, liveweight, survival index, and cell count

M Haile-Mariam, PJ Bowman, ME Goddard

Journal article  |  2004  |  Australian Journal of Agricultural Research

Genotype x environment interaction for milk production of daughters of Australian dairy sires from test-day records

BJ Hayes, M Carrick, P Bowman, ME Goddard

Journal article  |  2003  |  Journal of Dairy Science

Evaluation of marker assisted selection in pig enterprises

B Hayes, ME Goddard

Journal article  |  2003  |  Livestock Production Science