Clare Sloggett

Spatially Fractionated X-Ray Microbeams Elicit a More Sustained Immune and Inflammatory Response in the Brainstem than Homogenous Irradiation

Lloyd ML Smyth, Jeffrey C Crosbie, Clare Sloggett, Peter AW Rogers, Jacqueline F Donoghue

Journal article  |  2021  |  RADIATION RESEARCH

Synchrotron microbeam radiation therapy (MRT) is a preclinical irradiation technique which could be used to treat intracranial mal..

Elucidating the role of long intergenic non-coding RNA 339 in human endometrium and endometriosis

Sarah J Holdsworth-Carson, Molly Churchill, Jacqueline F Donoghue, Sally Mortlock, Jenny N Fung, Clare Sloggett, Jessica Chung, Leonie Cann, Wan Tinn Teh, Katie-Rose Campbell, Rodney Luwor, Martin Healey, Grant Montgomery, Jane E Girling, Peter AW Rogers

Journal article  |  2021  |  MOLECULAR HUMAN REPRODUCTION

Endometriosis is a complex disease, influenced by genetic factors. Genetic markers associated with endometriosis exist at chromoso..

Obesity does not alter endometrial gene expression in women with endometriosis

Sarah J Holdsworth-Carson, Jessica Chung, Clare Sloggett, Sally Mortlock, Jenny N Fung, Grant W Montgomery, Uri P Dior, Martin Healey, Peter AW Rogers, Jane E Girling

Conference Proceedings  |  2020  |  REPRODUCTIVE BIOMEDICINE ONLINE

RESEARCH QUESTION: Does obesity affect endometrial gene expression in women with endometriosis, specifically women with stage I di..

Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software

Peter Georgeson, Anna Syme, Clare Sloggett, Jessica Chung, Harriet Dashnow, Michael Milton, Andrew Lonsdale, David Powell, Torsten Seemann, Bernard Pope

Journal article  |  2019  |  GIGASCIENCE

BACKGROUND: Bioinformatics software tools are often created ad hoc, frequently by people without extensive training in software de..

Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud

Enis Afgan, Clare Sloggett, Nuwan Goonasekera, Igor Makunin, Derek Benson, Mark Crowe, Simon Gladman, Yousef Kowsar, Michael Pheasant, Ron Horst, Andrew Lonie

Journal article  |  2015  |  PLOS ONE

BACKGROUND: Analyzing high throughput genomics data is a complex and compute intensive task, generally requiring numerous software..

Determining the evolutionary origin of lymph node metastases in prostate cancer

Other Stefano Mangiola, Matthew KH Hong, Geoff Macintyre, Clare Sloggett, Marek Cmero, Natalie Kurganovs, Michael Kerger, Andrew Ryan, Anthony J Costello, Niall M Corcoran, Christopher M Hovens

Conference Proceedings  |  2015  |  BJU INTERNATIONAL

Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer

Matthew KH Hong, Geoff Macintyre, David C Wedge, Peter Van Loo, Keval Patel, Sebastian Lunke, Ludmil B Alexandrov, Clare Sloggett, Marek Cmero, Francesco Marass, Dana Tsui, Stefano Mangiola, Andrew Lonie, Haroon Naeem, Nikhil Sapre, Pramit M Phal, Natalie Kurganovs, Xiaowen Chin, Michael Kerger, Anne Y Warren, et al.

Journal article  |  2015  |  NATURE COMMUNICATIONS

Tumour heterogeneity in primary prostate cancer is a well-established phenomenon. However, how the subclonal diversity of tumours ..

Community-driven development for computational biology at Sprints, Hackathons and Codefests

Steffen Moeller, Enis Afgan, Michael Banck, Raoul JP Bonnal, Timothy Booth, John Chilton, Peter JA Cock, Markus Gumbel, Nomi Harris, Richard Holland, Matus Kalas, Laszlo Kajan, Eri Kibukawa, David R Powel, Pjotr Prins, Jacqueline Quinn, Olivier Sallou, Francesco Strozzi, Torsten Seemann, Clare Sloggett, et al.

Journal article  |  2014  |  BMC BIOINFORMATICS

BACKGROUND: Computational biology comprises a wide range of technologies and approaches. Multiple technologies can be combined to ..

Colorectal Cancer Cell Lines Are Representative Models of the Main Molecular Subtypes of Primary Cancer

Dmitri Mouradov, Clare Sloggett, Robert N Jorissen, Christopher G Love, Shan Li, Antony W Burgess, Diego Arango, Robert L Strausberg, Daniel Buchanan, Samuel Wormald, Liam O'Connor, Jennifer L Wilding, David Bicknell, Ian PM Tomlinson, Walter F Bodmer, John M Mariadason, Oliver M Sieber

Journal article  |  2014  |  CANCER RESEARCH

Human colorectal cancer cell lines are used widely to investigate tumor biology, experimental therapy, and biomarkers. However, to..

MP49-07 THE ANDROGEN RECEPTOR IS A DRIVER OF DNA BREAKPOINTS AND FUSION EVENTS IN PROSTATE CANCER

Matthew Hong, Geoff Macintyre, Niall Corcoran, Clare Sloggett, Haroon Naeem, Marek Cmero, John Pedersen, Izhak Haviv, Andrew Ryan, Pramit Phal, Anthony Costello, Christopher Hovens

Journal article  |  2014  |  Journal of Urology