Antonio Jimeno Yepes

A representation model for biological entities by fusing structured axioms with unstructured texts.

Peiliang Lou, YuXin Dong, Antonio Jimeno Yepes, Chen Li

Journal article  |  2021  |  Bioinformatics

MOTIVATION: Structured semantic resources, for example, biological knowledge bases and ontologies, formally define biological conc..

Brief Description of COVID-SEE: The Scientific Evidence Explorer for COVID-19 Related Research

Karin Verspoor, Simon Šuster, Yulia Otmakhova, Shevon Mendis, Zenan Zhai, Biaoyan Fang, Jey Han Lau, Timothy Baldwin, Antonio Jimeno Yepes, David Martinez

Book Chapter  |  2021  |  Lecture Notes in Artificial Intelligence

Combining Social Media and FDA Adverse Event Reporting System to Detect Adverse Drug Reactions.

Ying Li, Antonio Jimeno Yepes, Cao Xiao

Journal article  |  2020  |  Drug Safety

INTRODUCTION: Adverse drug reactions (ADRs) are unintended reactions caused by a drug or combination of drugs taken by a patient. ..

Forget Me Not: Reducing Catastrophic Forgetting for Domain Adaptation in Reading Comprehension

Y Xu, X Zhong, AJJ Yepes, JH Lau

Conference Proceedings  |  2020  |  2020 International Joint Conference on Neural Networks (IJCNN)

The creation of large-scale open domain reading comprehension data sets in recent years has enabled the development of end-to-end ..

Evaluation of Combined Artificial Intelligence and Radiologist Assessment to Interpret Screening Mammograms

Thomas Schaffter, Diana SM Buist, Christoph Lee, Yaroslav Nikulin, Dezso Ribli, Yuanfang Guan, William Lotter, Zequn Jie, Hao Du, Sijia Wang, Jiashi Feng, Mengling Feng, Hyo-Eun Kim, Francisco Albiol, Alberto Albiol, Stephen Morrell, Zbigniew Wojna, Mehmet Eren Ahsen, Umar Asif, Antonio Jimeno Yepes, et al.

Journal article  |  2020  |  JAMA Network Open

Importance: Mammography screening currently relies on subjective human interpretation. Artificial intelligence (AI) advances could..

BioNorm: deep learning-based event normalization for the curation of reaction databases.

Peiliang Lou, Antonio Jimeno Yepes, Zai Zhang, Qinghua Zheng, Xiangrong Zhang, Chen Li

Journal article  |  2020  |  Bioinformatics

MOTIVATION: A biochemical reaction, bio-event, depicts the relationships between participating entities. Current text mining resea..

Image-Based Table Recognition: Data, Model, and Evaluation

X Zhong, E ShafieiBavani, A Jimeno Yepes

Conference Proceedings  |  2020  |  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Important information that relates to a specific topic in a document is often organized in tabular format to assist readers with i..

Prediction of secondary structure population and intrinsic disorder of proteins using multitask deep learning.

Xu Ying, Andre Leier, Tatiana T Marquez-Lago, Jue Xie, Antonio Jose Jimeno Yepes, James C Whisstock, Campbell Wilson, Jiangning Song

Journal article  |  2020  |  AMIA Annual Symposium Proceedings

Recent research in predicting protein secondary structure populations (SSP) based on Nuclear Magnetic Resonance (NMR) chemical shi..

Global Locality in Biomedical Relation and Event Extraction

Elaheh ShafieiBavani, Antonio Jimeno Yepes, Xu Zhong, David Martinez Iraola

Conference Proceedings  |  2020  |  Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing

Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies

Rachel Bawden, K Bretonnel Cohen, Cristian Grozea, Antonio Jimeno Yepes, Madeleine Kittner, Martin Krallinger, Nancy Mah, Aurelie Neveol, Mariana Neves, Felipe Soares, Amy Siu, Karin Verspoor, Maika Vicente Navarro

Conference Proceedings  |  2019  |  Proceedings of the Fourth Conference on Machine Translation (Volume 3: Shared Task Papers, Day 2)