Simon Gladman

No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics

Dannon Baker, Marius van den Beek, Daniel Blankenberg, Dave Bouvier, John Chilton, Nate Coraor, Frederik Coppens, Ignacio Eguinoa, Simon Gladman, Bjoern Gruening, Nicholas Keener, Delphine Lariviere, Andrew Lonie, Sergei Kosakovsky Pond, Wolfgang Maier, Anton Nekrutenko, James Taylor, Steven Weaver

Journal article  |  2020  |  PLoS Pathogens

The current state of much of the Wuhan pneumonia virus (severe acute respiratory syndrome coronavirus 2 [SARS-CoV-2]) research sho..

Temporal development of the oral microbiome and prediction of early childhood caries

SG Dashper, HL Mitchell, K-A Le Cao, L Carpenter, MG Gussy, H Calache, SL Gladman, DM Bulach, B Hoffmann, D Catmull, S Pruilh, S Johnson, L Gibbs, E Amezdroz, U Bhatnagar, T Seemann, G Mnatzaganian, DJ Manton, EC Reynolds

Journal article  |  2019  |  Scientific Reports

Human microbiomes are predicted to assemble in a reproducible and ordered manner yet there is limited knowledge on the development..

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia

Maria Victoria Schneider, Philippa C Griffin, Sonika Tyagi, Madison Flannery, Saravanan Dayalan, Simon Gladman, Nathan Watson-Haigh, Philipp E Bayer, Michael Charleston, Ira Cooke, Rob Cook, Richard J Edwards, David Edwards, Dominique Gorse, Malcolm McConville, David Powell, Marc R Wilkins, Andrew Lonie

Journal article  |  2019  |  Briefings in Bioinformatics

Bioconda: sustainable and comprehensive software distribution for the life sciences.

Björn Grüning, Ryan Dale, Andreas Sjödin, Brad A Chapman, Jillian Rowe, Christopher H Tomkins-Tinch, Renan Valieris, Johannes Köster, undefined Bioconda Team

Journal article  |  2018  |  Nature Methods

Emergence of High-Level Colistin Resistance in an Acinetobacter baumannii Clinical Isolate Mediated by Inactivation of the Global Regulator H-NS

Deanna Deveson Lucas, Bethany Crane, Amy Wright, Mei-Ling Han, Jennifer Moffatt, Dieter Bulach, Simon L Gladman, David Powell, Jesus Aranda, Torsten Seemann, Diana Machado, Teresa Pacheco, Teresa Marques, Miguel Viveiros, Roger Nation, Jian Li, Marina Harper, John D Boyce

Journal article  |  2018  |  Antimicrobial Agents and Chemotherapy

Community-Driven Data Analysis Training for Biology

Berenice Batut, Saskia Hiltemann, Andrea Bagnacani, Dannon Baker, Vivek Bhardwaj, Clemens Blank, Anthony Bretaudeau, Loraine Brillet-Gueguen, Martin Cech, John Chilton, Dave Clements, Olivia Doppelt-Azeroual, Anika Erxleben, Mallory Ann Freeberg, Simon Gladman, Youri Hoogstrate, Hans-Rudolf Hotz, Torsten Houwaart, Pratik Jagtap, Delphine Lariviere, et al.

Journal article  |  2018  |  Cell Systems

Best Practice Data Life Cycle Approaches for the Life Sciences

Philippa Griffin, Jyoti Khadake, Kate LeMay, Suzanna Lewis, Sandra Orchard, Andrew Pask, Bernard Pope, Ute Roessner, Keith Russell, Torsten Seemann, Andrew Treloar, Sonika Tyagi, Jeffrey Christiansen, Saravanan Dayalan, Simon Gladman, Sandra Hangartner, Helen Hayden, William Ho, Gabriel Keeble-Gagnère, Pasi Korhonen, et al.

Journal article  |  2017  |  F1000Research

Abstract Throughout history, the life sciences have been revolutionised by technological advances; in our era this is manifested b..

Porphyromonas gingivalis Uses Specific Domain Rearrangements and Allelic Exchange to Generate Diversity in Surface Virulence Factors

Stuart G Dashper, Helen L Mitchell, Christine A Seers, Simon L Gladman, Torsten Seemann, Dieter M Bulach, P Scott Chandry, Keith J Cross, Steven M Cleal, Ericc Reynolds

Journal article  |  2017  |  FRONTIERS IN MICROBIOLOGY

Four simple recommendations to encourage best practices in research software.

Rafael C Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutierrez, Neil Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla Garcia, Josep Ll Gelpí, Simon Gladman, Carole Goble, Montserrat González Ferreiro, Alejandra Gonzalez-Beltran, Philippa C Griffin, Björn Grüning, Jonas Hagberg, et al.

Journal article  |  2017  |  F1000Research

Scientific research relies on computer software, yet software is not always developed following practices that ensure its quality ..

Best practice data life cycle approaches for the life sciences.

Philippa C Griffin, Jyoti Khadake, Kate S LeMay, Suzanna E Lewis, Sandra Orchard, Andrew Pask, Bernard Pope, Ute Roessner, Keith Russell, Torsten Seemann, Andrew Treloar, Sonika Tyagi, Jeffrey H Christiansen, Saravanan Dayalan, Simon Gladman, Sandra B Hangartner, Helen L Hayden, William WH Ho, Gabriel Keeble-Gagnère, Pasi K Korhonen, et al.

Journal article  |  2017  |  F1000Research

Throughout history, the life sciences have been revolutionised by technological advances; in our era this is manifested by advance..