Shuai Nie

What Are We Missing by Using Hydrophilic Enrichment? Improving Bacterial Glycoproteome Coverage Using Total Proteome and FAIMS Analyses

Ameera Raudah Ahmad Izaham, Ching-Seng Ang, Shuai Nie, Lauren E Bird, Nicholas A Williamson, Nichollas E Scott

Journal article  |  2021  |  Journal of Proteome Research

Hydrophilic interaction liquid chromatography (HILIC) glycopeptide enrichment is an indispensable tool for the high-throughput cha..

Quantitative lipidomic analysis of Ascaris suum

Tao Wang, Shuai Nie, Guangxu Ma, Johnny Vlaminck, Peter Geldhof, Nicholas A Williamson, Gavin E Reid, Robin B Gasser

Journal article  |  2020  |  PLOS Neglected Tropical Diseases

Ascaris is a soil-transmitted nematode that causes ascariasis, a neglected tropical disease affecting predominantly children and a..

Proteomics reveals region-specific hemostatic alterations in response to mechanical ventilation in a preterm lamb model of lung injury

Christine Schmid, Vera Ignjatovic, Boyuan Pang, Shuai Nie, Nicholas A Williamson, David G Tingay, Prue M Pereira-Fantini

Journal article  |  2020  |  Thrombosis Research

Introduction Preterm infants often require assisted ventilation, however ventilation when applied to the immature lung can initiat..

Expanding the allergen repertoire of salmon and catfish

Thimo Ruethers, Aya C Taki, Shaymaviswanathan Karnaneedi, Shuai Nie, Tanja Kalic, Danyi Dai, Sakda Daduang, Michael Leeming, Nicholas A Williamson, Heimo Breiteneder, Sam S Mehr, Sandip D Kamath, Dianne E Campbell, Andreas L Lopata

Journal article  |  2020  |  Allergy

BACKGROUND: Diagnostic tests for fish allergy are hampered by the large number of under-investigated fish species. Four salmon all..

Type IX Secretion System Cargo Proteins Are Glycosylated at the C Terminus with a Novel Linking Sugar of the Wbp/Vim Pathway

Paul D Veith, Mikio Shoji, Richard AJ O'Hair, Michael G Leeming, Shuai Nie, Michelle D Glew, Gavin E Reid, Koji Nakayama, Eric C Reynolds

Journal article  |  2020  |  mBio

Porphyromonas gingivalis and Tannerella forsythia use the type IX secretion system to secrete cargo proteins to the cell surface w..

Ultrahigh-Resolution Mass Spectrometry Method for Resolving C-13-Enrichment Patterns in a Microalgal Lipidome

Sheik Nadeem Elahee Doomun, Shuai Nie, Stella Loke, Greg M Kowalski, Peter L Beech, Damien L Callahan

Journal article  |  2020  |  Journal of The American Society for Mass Spectrometry

The analysis of 13C-labeled lipids by mass spectrometry is challenging due to the complexity from labeling the large number of car..

Lipid composition and abundance in the reproductive and alimentary tracts of female Haemonchus contortus

Tao Wang, Guangxu Ma, Shuai Nie, Nicholas A Williamson, Gavin E Reid, Robin B Gasser

Journal article  |  2020  |  Parasites and Vectors

BACKGROUND: Lipids play essential structural and functional roles in the biology of animals. Studying the composition and abundanc..

Widespread remodeling of proteome solubility in response to different protein homeostasis stresses

Xiaojing Sui, Douglas EV Pires, Angelique R Ormsby, Dezerae Cox, Shuai Nie, Giulia Vecchi, Michele Vendruscolo, David B Ascher, Gavin E Reid, Danny M Hatters

Journal article  |  2020  |  Proceedings of the National Academy of Sciences of the United States of America

The accumulation of protein deposits in neurodegenerative diseases has been hypothesized to depend on a metastable subproteome vul..

Tropomyosin Is A Novel Major Fish Allergen Of Unrecognized Importance

Thimo Ruethers, Sandip Kamath, Aya Taki, Le Thu, Shaymaviswanathan Karnaneedi, Roni Nugraha, Truc Cao, Shuai Nie, Nicholas Williamson, Sam Mehr, Dianne Campbell, Andreas Lopata

Conference Proceedings  |  2020  |  JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Preterm Lung Exhibits Distinct Spatiotemporal Proteome Expression at Initiation of Lung Injury

Prue M Pereira-Fantini, Boyuan Pang, Sean G Byars, Regina B Oakley, Elizabeth J Perkins, Peter A Dargaville, Peter G Davis, Shuai Nie, Nicholas A Williamson, Vera Ignjatovic, David G Tingay

Journal article  |  2019  |  American Journal of Respiratory Cell and Molecular Biology

The development of regional lung injury in the preterm lung is not well understood. This study aimed to characterize time-dependen..