Yao-Ban Chan

The Multilocus Multispecies Coalescent: A Flexible New Model of Gene Family Evolution.

Qiuyi Li, Celine Scornavacca, Nicolas Galtier, Yao-Ban Chan

Journal article  |  2020  |  Systematic Biology

Incomplete lineage sorting (ILS), the interaction between coalescence and speciation, can generate incongruence between gene trees..

Reconciliation of a gene network and species tree

Yao-ban Chan, Charles Robin

Journal article  |  2019  |  Journal of Theoretical Biology

Alignment-free inference of hierarchical and reticulate phylogenomic relationships.

Guillaume Bernard, Cheong Xin Chan, Yao-Ban Chan, Xin-Yi Chua, Yingnan Cong, James M Hogan, Stefan R Maetschke, Mark A Ragan

Journal article  |  2019  |  Briefings in Bioinformatics

We are amidst an ongoing flood of sequence data arising from the application of high-throughput technologies, and a concomitant fu..

Upper bounds on the growth rates of independent sets in two dimensions via corner transfer matrices

Yao-ban Chan, Andrew Rechnitzer

Journal article  |  2018  |  Linear Algebra and its Applications

Accurate Costing of Mining Equipment

Christina N Burt, Yao-ban Chan

Book Chapter  |  2018  |  Studies in Systems, Decision and Control

Utilisation-Based Equipment Selection

Christina N Burt, Louis Caccetta, Yao-ban Chan

Book Chapter  |  2018  |  Studies in Systems, Decision and Control

Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations.

Yao-Ban Chan, Vincent Ranwez, Céline Scornavacca

Journal article  |  2017  |  Journal of Theoretical Biology

Gene trees and species trees can be discordant due to several processes. Standard models of reconciliations consider macro-evoluti..

Robust Inference of Genetic Exchange Communities from Microbial Genomes Using TF-IDF.

Yingnan Cong, Yao-Ban Chan, Charles A Phillips, Michael A Langston, Mark A Ragan

Journal article  |  2017  |  Frontiers in Microbiology

Bacteria and archaea can exchange genetic material across lineages through processes of lateral genetic transfer (LGT). Collective..

A novel alignment-free method for detection of lateral genetic transfer based on TF-IDF.

Yingnan Cong, Yao-Ban Chan, Mark A Ragan

Journal article  |  2016  |  Sci Rep

Lateral genetic transfer (LGT) plays an important role in the evolution of microbes. Existing computational methods for detecting ..

Exploring lateral genetic transfer among microbial genomes using TF-IDF.

Yingnan Cong, Yao-Ban Chan, Mark A Ragan

Journal article  |  2016  |  Sci Rep

Many microbes can acquire genetic material from their environment and incorporate it into their genome, a process known as lateral..