Yao-Ban Chan

Reconciliation of a gene network and species tree

Yao-ban Chan, Charles Robin

Journal article  |  2019  |  Journal of Theoretical Biology

Alignment-free inference of hierarchical and reticulate phylogenomic relationships.

Guillaume Bernard, Cheong Xin Chan, Yao-Ban Chan, Xin-Yi Chua, Yingnan Cong, James M Hogan, Stefan R Maetschke, Mark A Ragan

Journal article  |  2019  |  Briefings in Bioinformatics

We are amidst an ongoing flood of sequence data arising from the application of high-throughput technologies, and a concomitant fu..

Upper bounds on the growth rates of independent sets in two dimensions via corner transfer matrices

Yao-ban Chan, Andrew Rechnitzer

Journal article  |  2018  |  Linear Algebra and its Applications

Accurate Costing of Mining Equipment

Christina N Burt, Yao-ban Chan

Book Chapter  |  2018  |  Studies in Systems, Decision and Control

Utilisation-Based Equipment Selection

Christina N Burt, Louis Caccetta, Yao-ban Chan

Book Chapter  |  2018  |  Studies in Systems, Decision and Control

Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations.

Yao-Ban Chan, Vincent Ranwez, Céline Scornavacca

Journal article  |  2017  |  Journal of Theoretical Biology

Gene trees and species trees can be discordant due to several processes. Standard models of reconciliations consider macro-evoluti..

Robust inference of genetic exchange communities from microbial genomes using TF-IDF

Y Cong, YB Chan, CA Phillips, MA Langston, MA Ragan

Journal article  |  2017  |  Frontiers in Microbiology

A novel alignment-free method for detection of lateral genetic transfer based on TF-IDF.

Yingnan Cong, Yao-Ban Chan, Mark A Ragan

Journal article  |  2016  |  Sci Rep

Lateral genetic transfer (LGT) plays an important role in the evolution of microbes. Existing computational methods for detecting ..

Exploring lateral genetic transfer among microbial genomes using TF-IDF.

Yingnan Cong, Yao-Ban Chan, Mark A Ragan

Journal article  |  2016  |  Sci Rep

Many microbes can acquire genetic material from their environment and incorporate it into their genome, a process known as lateral..

Exploring the space of gene/species reconciliations with transfers.

Yao-Ban Chan, Vincent Ranwez, Céline Scornavacca

Journal article  |  2015  |  Journal of Mathematical Biology

Reconciliations between gene and species trees have important applications in the study of genome evolution (e.g. sequence ortholo..

Upper bounds on the growth rates of hard squares and related models via corner transfer matrices

YB Chan

Conference Proceedings  |  2015  |  Discrete Mathematics and Theoretical Computer Science

Accurate lower bounds on 2-D constraint capacities from corner transfer matrices

YB Chan, A Rechnitzer

Journal article  |  2014  |  IEEE Transactions on Information Theory

Reconciliation-based detection of co-evolving gene families.

Yao-ban Chan, Vincent Ranwez, Celine Scornavacca

Journal article  |  2013  |  BMC Bioinformatics

BACKGROUND: Genes located in the same chromosome region share common evolutionary events more often than other genes (e.g. a segme..

A natural stochastic extension of the sandpile model on a graph

YB Chan, JF Marckert, T Selig

Journal article  |  2013  |  Journal of Combinatorial Theory, Series A

Series expansions from the corner transfer matrix renormalization group method: II. Asymmetry and high-density hard squares

YB Chan

Journal article  |  2013  |  Journal of Physics A: Mathematical and Theoretical

A Monte Carlo study of non-trapped self-avoiding walks

YB Chan, A Rechnitzer

Journal article  |  2012  |  Journal of Physics A: Mathematical and Theoretical

Series expansions from the corner transfer matrix renormalization group method: The hard-squares model

YB Chan

Journal article  |  2012  |  Journal of Physics A: Mathematical and Theoretical

The Ising Susceptibility Scaling Function

Y Chan, AJ Guttmann, BG Nickel, JHH Perk

Journal article  |  2011  |  J. Stat. Phys. (2011) 145:549-590

Using Evidence of Mixed Populations to Select Variables for Clustering Very High-Dimensional Data

Yao-ban Chan, Peter Hall

Journal article  |  2010  |  Journal of the American Statistical Association

Exact Models for the k-Connected Minimum Energy Problem

Christina Burt, Yao-ban Chan, Nikki Sonenberg

Book Chapter  |  2010  |  Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering

ROBUST NEAREST-NEIGHBOR METHODS FOR CLASSIFYING HIGH-DIMENSIONAL DATA

Yao-Ban Chan, Peter Hall

Journal article  |  2009  |  Annals of Statistics

Scale adjustments for classifiers in high-dimensional, low sample size settings

Yao-Ban Chan, Peter Hall

Journal article  |  2009  |  Biometrika

Accurate costing in mixed integer utilisation mining models

C Burt, Y Chan

Conference Proceedings  |  2009  |  18th IMACS World Congress - MODSIM09 International Congress on Modelling and Simulation

Mean unknotting times of random knots and embeddings

Yao-ban Chan, Aleksander L Owczarek, Andrew Rechnitzer, Gordon Slade

Journal article  |  2007  |  Journal of Statistical Mechanics: Theory and Experiment

Selected problems in lattice statistical mechanics

Y CHAN

Thesis / Dissertation  |  2005

Some results for directed lattice walkers in a strip

Y CHAN, AJ GUTTMANN

Conference Proceedings  |  2003  |  Discrete Mathematics and Theoretical Computer Science