Sebastian Duchene Garzon

The Recovery, Interpretation and Use of Ancient Pathogen Genomes.

Sebastián Duchêne, Simon YW Ho, Ann G Carmichael, Edward C Holmes, Hendrik Poinar

Journal article  |  2020  |  Current Biology

The ability to sequence genomes from ancient biological material has provided a rich source of information for evolutionary biolog..

Tracking the COVID-19 pandemic in Australia using genomics

Torsten Seemann, Courtney R Lane, Norelle L Sherry, Sebastian Duchene, Anders Goncalves da Silva, Leon Caly, Michelle Sait, Susan A Ballard, Kristy Horan, Mark B Schultz, Tuyet Hoang, Marion Easton, Sally Dougall, Timothy P Stinear, Julian Druce, Mike Catton, Brett Sutton, Annaliese van Diemen, Charles Alpren, Deborah A Williamson, et al.

Journal article  |  2020  |  Nature Communications

Genomic sequencing has significant potential to inform public health management for SARS-CoV-2. Here we report high-throughput gen..

SNPPar: identifying convergent evolution and other homoplasies from microbial whole-genome alignments

David Edwards, Sebastián Duchêne, Bernard Pope, Kathryn Holt

Journal article  |  2020

Abstract Homoplasic single nucleotide polymorphisms (SNPs) are considered important signatures of strong (positive) selective pres..

Dating the emergence of human pathogens

Simon YW Ho, Sebastian Duchene

Journal article  |  2020  |  Science

Evolution and Global Transmission of a Multidrug-Resistant, Community-Associated Methicillin-Resistant Staphylococcus aureus Lineage from the Indian Subcontinent

Eike J Steinig, Sebastian Duchene, D Ashley Robinson, Stefan Monecke, Maho Yokoyama, Maisem Laabei, Peter Slickers, Patiyan Andersson, Deborah Williamson, Angela Kearns, Richard V Goering, Elizabeth Dickson, Ralf Ehricht, Margaret Ip, Matthew VN O'Sullivan, Geoffrey W Coombs, Andreas Petersen, Grainne Brennan, Anna C Shore, David C Coleman, et al.

Journal article  |  2019  |  mBio

The evolution and global transmission of antimicrobial resistance have been well documented for Gram-negative bacteria and health ..

The molecular clock of Mycobacterium tuberculosis

Fabrizio Menardo, Sebastian Duchene, Daniela Brites, Sebastien Gagneux

Journal article  |  2019  |  PLOS Pathogens

Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics

Mark R Davies, Liam McIntyre, Ankur Mutreja, Jake A Lacey, John A Lees, Rebecca J Towers, Sebastian Duchene, Pierre R Smeesters, Hannah R Frost, David J Price, Matthew TG Holden, Sophia David, Philip M Giffard, Kate A Worthing, Anna C Seale, James A Berkley, Simon R Harris, Tania Rivera-Hernandez, Olga Berking, Amanda J Cork, et al.

Journal article  |  2019  |  Nature Genetics

Genome Analysis of Coxsackievirus A4 Isolates From Hand, Foot, and Mouth Disease Cases in Shandong, China

Min Wang, Juan Li, Ming-Xiao Yao, Ya-Wei Zhang, Tao Hu, Michael J Carr, Sebastian Duchene, Xing-Cheng Zhang, Zhen-Jie Zhang, Hong Zhou, Yi-Gang Tong, Shu-Jun Ding, Xian-Jun Wang, Wei-Feng Shi

Journal article  |  2019  |  Frontiers in Microbiology

Limited Sustained Local Transmission of HIV-1 CRF01_AE in New South Wales, Australia

Francesca Di Giallonardo, Angie N Pinto, Phillip Keen, Ansari Shaik, Alex Carrera, Hanan Salem, Barbara Telfer, Craig Cooper, Karen Price, Christine Selvey, Joanne Holden, Nadine Bachmann, Frederick J Lee, Dominic E Dwyer, Sebastian Duchene, Edward C Holmes, Andrew E Grulich, Anthony D Kelleher, Rebecca Guy, Garrett Prestage, et al.

Journal article  |  2019  |  Viruses

Evolutionary stasis of viruses?

Edward C Holmes, Sebastian Duchene

Journal article  |  2019  |  Nature Reviews Microbiology