Swati Varshney

Simulation of mass spectrometry-based proteomics data with Synthedia.

Michael G Leeming, Ching-Seng Ang, Shuai Nie, Swati Varshney, Nicholas A Williamson

Journal article  |  2023  |  Bioinform Adv

MOTIVATION: A large number of experimental and bioinformatic parameters must be set to identify and quantify peptides in mass spec..

Temporal variation in bacterial community profile on patients' bedsheets in a primary healthcare unit.

Swati Varshney, Swapnil Kajale, Shivani Khatri, Deepti Gupta, Avinash Sharma, Shilpi Sharma

Journal article  |  2022  |  Arch Microbiol

Fabrics serve as fomites in spreading nosocomial infections. As a patient is in close contact with bedsheets, it is important to a..

Getting more out of FLAG-Tag co-immunoprecipitation mass spectrometry experiments using FAIMS

Ching-Seng Ang, Joanna Sacharz, Michael G Leeming, Shuai Nie, Swati Varshney, Nichollas E Scott, Nicholas A Williamson

Journal article  |  2022  |  JOURNAL OF PROTEOMICS

Co-immunoprecipitation of proteins coupled to mass spectrometry is critical for the understanding of protein interaction networks...

Lithium administered to pregnant, lactating and neonatal rats: entry into developing brain

Shene Yi-Shiuan Chiou, Kai Kysenius, Yifan Huang, Mark David Habgood, Liam M Koehn, Fiona Qiu, Peter J Crouch, Swati Varshney, Katherine Ganio, Katarzyna Magdalena Dziegielewska, Norman Ruthven Saunders

Journal article  |  2021  |  FLUIDS AND BARRIERS OF THE CNS

BACKGROUND: Little is known about the extent of drug entry into developing brain, when administered to pregnant and lactating wome..

Phosphomatics: interactive interrogation of substrate-kinase networks in global phosphoproteomics datasets

Michael G Leeming, Sean O'Callaghan, Luana Licata, Marta Iannuccelli, Prisca Lo Surdo, Elisa Micarelli, Ching-Seng Ang, Shuai Nie, Swati Varshney, Sadia Ameen, Heung-Chin Cheng, Nicholas A Williamson

Journal article  |  2021  |  BIOINFORMATICS

MOTIVATION: Mass spectrometry-based phosphoproteomics can routinely identify and quantify thousands of phosphorylated peptides fro..

Prednisolone Alters Endometrial Decidual Cells and Affects Decidual-Trophoblast Interactions

Eliza Grbac, Teresa So, Swati Varshney, Nicholas Williamson, Evdokia Dimitriadis, Ellen Menkhorst

Journal article  |  2021  |  FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY

Poor pregnancy outcomes such as recurrent pregnancy loss (RPL) and preeclampsia are associated with impaired decidualization and a..

Chronic systemic exposure to IL6 leads to deregulation of glycolysis and fat accumulation in the zebrafish liver

Manoj K Singh, Rijith Jayarajan, Swati Varshney, Sindhuri Upadrasta, Archana Singh, Rajni Yadav, Vinod Scaria, Shantanu Sengupta, Dhanasekaran Shanmugam, undefined Shalimar, Sridhar Sivasubbu, Sheetal Gandotra, Chetana Sachidanandan

Journal article  |  2021  |  BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

Inflammation is a constant in Non-Alcoholic Fatty Liver Disease (NAFLD), although their relationship is unclear. In a transgenic z..

Human kidney stone matrix proteins alleviate hyperoxaluria induced renal stress by targeting cell-crystal interactions

Shifa Narula, Simran Tandon, Dhruv Kumar, Swati Varshney, Khushboo Adlakha, Shantanu Sengupta, Shrawan Kumar Singh, Chanderdeep Tandon

Journal article  |  2020  |  Life Sciences

Increased levels of urinary oxalate also known as hyperoxaluria, increase the likelihood of kidney stone formation through enhance..

Galectin-7 Impairs Placentation and Causes Preeclampsia Features in Mice

Ellen Menkhorst, Wei Zhou, Leilani L Santos, Sarah Delforce, Teresa So, Kate Rainczuk, Hannah Loke, Argyro Syngelaki, Swati Varshney, Nicholas Williamson, Kirsty Pringle, Morag J Young, Kypros H Nicolaides, Yves St-Pierre, Eva Dimitriadis

Journal article  |  2020  |  Hypertension

Preeclampsia is a serious pregnancy-induced disorder unique to humans. The etiology of preeclampsia is poorly understood; however,..

Micro RNAs upregulated in Vitiligo skin play an important role in its aetiopathogenesis by altering TRP1 expression and keratinocyte-melanocytes cross-talk (vol 9, 10079, 2019)

Utpreksha Vaish, Avinash A Kumar, Swati Varshney, Shreya Ghosh, Shantanu Sengupta, Chandni Sood, Hemanta K Kar, Pankaj Sharma, Vivek T Natarajan, Rajesh S Gokhale, Rajni Rani

Journal article  |  2020  |  SCIENTIFIC REPORTS

An amendment to this paper has been published and can be accessed via a link at the top of the paper.