Andrew Lonie

Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv.

Farah Zaib Khan, Stian Soiland-Reyes, Richard O Sinnott, Andrew Lonie, Carole Goble, Michael R Crusoe

Journal article  |  2019  |  GigaScience

BACKGROUND: The automation of data analysis in the form of scientific workflows has become a widely adopted practice in many field..

Hi-Plex2: a simple and robust approach to targeted sequencing-based genetic screening

Fleur Hammet, Khalid Mahmood, Thomas R Green, Nguyen-Dumont Tu, Melissa C Southey, Daniel D Buchanan, Andrew Lonie, Katherine L Nathanson, Fergus J Couch, Bernard J Pope, Daniel J Park

Journal article  |  2019  |  BioTechniques

We have previously reported Hi-Plex, a multiplex PCR methodology for building targeted DNA sequencing libraries that offers a low-..

CloudLaunch: Discover and deploy cloud applications

Enis Afgan, Andrew Lonie, James Taylor, Nuwan Goonasekera

Journal article  |  2019  |  Future Generation Computer Systems

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia

Maria Victoria Schneider, Philippa C Griffin, Sonika Tyagi, Madison Flannery, Saravanan Dayalan, Simon Gladman, Nathan Watson-Haigh, Philipp E Bayer, Michael Charleston, Ira Cooke, Rob Cook, Richard J Edwards, David Edwards, Dominique Gorse, Malcolm McConville, David Powell, Marc R Wilkins, Andrew Lonie

Journal article  |  2019  |  Briefings in Bioinformatics

Is RNASEL:p.Glu265*a modifier of early-onset breast cancer risk for carriers of high-risk mutations?

Tu Nguyen-Dumont, Zhi L Teo, Fleur Hammet, Alexis Roberge, Maryam Mahmoodi, Helen Tsimiklis, Daniel J Park, Bernard J Pope, Andrew Lonie, Miroslav K Kapuscinski, Khalid Mahmood, David E Goldgar, Graham G Giles, Ingrid Winship, John L Hopper, Melissa C Southey

Journal article  |  2018  |  BMC CANCER

Investigating reproducibility and tracking provenance - A genomic workflow case study

Sehrish Kanwal, Farah Zaib Khan, Andrew Lonie, Richard O Sinnott

Journal article  |  2017  |  BMC Bioinformatics

TruXy: Trusted Storage Cloud for Scientific Workflows

Surya Nepal, Richard O Sinnott, Carsten Friedrich, Catherine Wise, Shiping Chen, Sehrish Kanwal, Jinhui Yao, Andrew Lonie

Journal article  |  2017  |  IEEE TRANSACTIONS ON CLOUD COMPUTING

Genome-Wide Measures of Peripheral Blood Dna Methylation and Prostate Cancer Risk in a Prospective Nested Case-Control Study

Liesel M FitzGerald, Haroon Naeem, Enes Makalic, Daniel F Schmidt, James G Dowty, Jihoon E Joo, Chol-Hee Jung, Julie K Bassett, Pierre-Antoine Dugue, Jessica Chung, Andrew Lonie, Roger L Milne, Ee Ming Wong, John L Hopper, Dallas R English, Gianluca Severi, Laura Baglietto, John Pedersen, Graham G Giles, Melissa C Southey

Journal article  |  2017  |  The Prostate

Genome-wide measures of DNA methylation in peripheral blood and the risk of urothelial cell carcinoma: a prospective nested case-control study

Pierre-Antoine Dugue, Maree T Brinkman, Roger L Milne, Ee Ming Wong, Liesel M FitzGerald, Julie K Bassett, Jihoon E Joo, Chol-Hee Jung, Enes Makalic, Daniel F Schmidt, Daniel J Park, Jessica Chung, Anthony D Ta, Damien M Bolton, Andrew Lonie, Anthony Longano, John L Hopper, Gianluca Severi, Richard Saffery, Dallas R English, et al.

Journal article  |  2016  |  British Journal of Cancer

Pipeline for the identification and classification of ion channels in parasitic flatworms

Bahiyah Nor, Neil D Young, Pasi K Korhonen, Ross S Hall, Patrick Tan, Andrew Lonie, Robin B Gasser

Journal article  |  2016  |  Parasites & Vectors