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A/Prof

Andrew Lonie

Director, Bioinformatics Commons & Senior Advisor
Medicine, Dentistry And Health Sciences
science & technology
life sciences & biomedicine
technology
humans
computer science
middle aged
computer science, information systems
female
adult
Andrew Lonie's Profile Picture
A/Prof

Andrew Lonie

 
Division
Medicine, Dentistry And Health Sciences
 
Primary Interest
Medical Informatics
Andrew Lonie's Profile Picture
A/Prof

Andrew Lonie

 

Projects

Displaying the 24 most recent projects by Andrew Lonie.

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Assessing The Clinical Practice Of Accepting Kidney Donor Organs And Evaluating Donor Organ Utility

2017 - 2018
Completed
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A High-Performance Cloud Resource For Computational Modelling

This project aims to build a relatively low-cost graphical-processing-unit-based cloud-accessible facility. Much current cutting-edge resear..

2017 - 2017
Completed
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A High-Performance Cloud Resource For Computational Modelling

This project aims to build a relatively low-cost graphical-processing-unit-based cloud-accessible facility. Much current cutting-edge resear..

2017 - 2017
Completed
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Preparing Australia For Genomic Medicine: A Proposal By The Australian Genomics Health Alliance

The sequencing of the human genome brings the possibility of more accurate identification of the underlying basis of many diseases. This tec..

2016 - 2020
Active
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Preparing Australia For Genomic Medicine: A Proposal By The Australian Genomics Health Alliance

The sequencing of the human genome brings the possibility of more accurate identification of the underlying basis of many diseases. This tec..

2016 - 2020
Active
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Preparing Australia For Genomic Medicine: A Proposal By The Australian Genomics Health Alliance

The sequencing of the human genome brings the possibility of more accurate identification of the underlying basis of many diseases. This tec..

2016 - 2020
Active
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Preparing Australia For Genomic Medicine: A Proposal By The Australian Genomics Health Alliance

The sequencing of the human genome brings the possibility of more accurate identification of the underlying basis of many diseases. This tec..

2016 - 2020
Active
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Preparing Australia For Genomic Medicine: A Proposal By The Australian Genomics Health Alliance

The sequencing of the human genome brings the possibility of more accurate identification of the underlying basis of many diseases. This tec..

2016 - 2020
Active
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Establishment Of Braembl Hub At University Of Melbourne Node Of Embl

2015 - 2016
Completed
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Wehi-Lscc Genomics Project Agreement

2014 - 2015
Completed
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The Victorian Life Sciences Computation Initiative (Vlsci) 2014-2016

2014 - 2017
Completed
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Identifying The Genetic Risks For Childhood Cancer

2014 - 2017
Completed
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Mouse Phenotype-Driven Breast Cancer Risk Gene Discovery

2014 - 2016
Completed
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High Risk Genes For Lobular Breast Cancer

This Small Business Innovation Research (SBIR) Phase I project aims to develop an innovative Raman-based real-time microalgal biofuel analyz..

2013 - 2016
Completed
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Ccv-Lscc Genomics Collaborative Subscription

2013 - 2014
Completed
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Determining The Origin Of Lethal Metastases In Multifocal Primary Prostate Cancer

New biomarkers are required to accurately predict lethal prostate cancer from benign, indolent disaese that doesn't require expensive treatm..

2013 - 2016
Completed
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Licence Of Tarbase For Scientific Purposes (Agreement)

2012
Active
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An Integrative And Distributed Framework For Subject Centric E-Research In Biomedical Imaging

This project will develop new tools for neuroimaging research: (i) efficient distributed infrastructure and workflow capabilities and (ii) s..

2011 - 2014
Completed
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An Integrative And Distributed Framework For Subject Centric E-Research In Biomedical Imaging

This project will develop new tools for neuroimaging research: (i) efficient distributed infrastructure and workflow capabilities and (ii) s..

2011 - 2014
Completed
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An Integrative And Distributed Framework For Subject Centric E-Research In Biomedical Imaging

This project will develop new tools for neuroimaging research: (i) efficient distributed infrastructure and workflow capabilities and (ii) s..

2011 - 2014
Completed
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An Integrative And Distributed Framework For Subject Centric E-Research In Biomedical Imaging

This project will develop new tools for neuroimaging research: (i) efficient distributed infrastructure and workflow capabilities and (ii) s..

2011 - 2014
Completed
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Lscc Collaboration Agreement

2011 - 2014
Completed
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An Integrative And Distributed Framework For Subject Centric E-Research In Biomedical Imaging

This project will develop new tools for neuroimaging research: (i) efficient distributed infrastructure and workflow capabilities and (ii) s..

2011 - 2013
Completed
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An Integrative And Distributed Framework For Subject Centric E-Research In Biomedical Imaging

This project will develop new tools for neuroimaging research: (i) efficient distributed infrastructure and workflow capabilities and (ii) s..

2011 - 2013
Completed

24

Projects

Project Types

14

Research Grant

10

Research Contracts

Scholarly Works

Displaying the 38 most recent scholarly works by Andrew Lonie.

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Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv.

Farah Zaib Khan, Stian Soiland-Reyes, Richard O Sinnott, Andrew Lonie, Carole Goble, Michael R Crusoe

Journal article  |  2019  |  GigaScience

BACKGROUND: The automation of data analysis in the form of scientific workflows has become a widely adopted practice in many field..

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CloudLaunch: Discover and deploy cloud applications

Enis Afgan, Andrew Lonie, James Taylor, Nuwan Goonasekera

Journal article  |  2019  |  Future Generation Computer Systems

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Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia

Maria Victoria Schneider, Philippa C Griffin, Sonika Tyagi, Madison Flannery, Saravanan Dayalan, Simon Gladman, Nathan Watson-Haigh, Philipp E Bayer, Michael Charleston, Ira Cooke, Rob Cook, Richard J Edwards, David Edwards, Dominique Gorse, Malcolm McConville, David Powell, Marc R Wilkins, Andrew Lonie

Journal article  |  2019  |  Briefings in Bioinformatics

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Is RNASEL:p.Glu265*a modifier of early-onset breast cancer risk for carriers of high-risk mutations?

Tu Nguyen-Dumont, Zhi L Teo, Fleur Hammet, Alexis Roberge, Maryam Mahmoodi, Helen Tsimiklis, Daniel J Park, Bernard J Pope, Andrew Lonie, Miroslav K Kapuscinski, Khalid Mahmood, David E Goldgar, Graham G Giles, Ingrid Winship, John L Hopper, Melissa C Southey

Journal article  |  2018  |  BMC Cancer

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Investigating reproducibility and tracking provenance - A genomic workflow case study

Sehrish Kanwal, Farah Zaib Khan, Andrew Lonie, Richard O Sinnott

Journal article  |  2017  |  BMC Bioinformatics

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TruXy: Trusted Storage Cloud for Scientific Workflows

Surya Nepal, Richard O Sinnott, Carsten Friedrich, Catherine Wise, Shiping Chen, Sehrish Kanwal, Jinhui Yao, Andrew Lonie

Journal article  |  2017  |  IEEE TRANSACTIONS ON CLOUD COMPUTING

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Genome-Wide Measures of Peripheral Blood Dna Methylation and Prostate Cancer Risk in a Prospective Nested Case-Control Study

Liesel M FitzGerald, Haroon Naeem, Enes Makalic, Daniel F Schmidt, James G Dowty, Jihoon E Joo, Chol-Hee Jung, Julie K Bassett, Pierre-Antoine Dugue, Jessica Chung, Andrew Lonie, Roger L Milne, Ee Ming Wong, John L Hopper, Dallas R English, Gianluca Severi, Laura Baglietto, John Pedersen, Graham G Giles, Melissa C Southey

Journal article  |  2017  |  The Prostate

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Genome-wide measures of DNA methylation in peripheral blood and the risk of urothelial cell carcinoma: a prospective nested case-control study

Pierre-Antoine Dugue, Maree T Brinkman, Roger L Milne, Ee Ming Wong, Liesel M FitzGerald, Julie K Bassett, Jihoon E Joo, Chol-Hee Jung, Enes Makalic, Daniel F Schmidt, Daniel J Park, Jessica Chung, Anthony D Ta, Damien M Bolton, Andrew Lonie, Anthony Longano, John L Hopper, Gianluca Severi, Richard Saffery, Dallas R English, et al.

Journal article  |  2016  |  British Journal of Cancer

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Pipeline for the identification and classification of ion channels in parasitic flatworms

Bahiyah Nor, Neil D Young, Pasi K Korhonen, Ross S Hall, Patrick Tan, Andrew Lonie, Robin B Gasser

Journal article  |  2016  |  Parasites & Vectors

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Architectural Models for Deploying and Running Virtual Laboratories in the Cloud

E Afgan, A Lonie, J Taylor, K Skala, N Goonasekera

Conference Proceedings  |  2016  |  2016 39th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO)

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CloudBridge: a Simple Cross-Cloud Python Library

Nuwan Goonasekera, Andrew Lonie, James Taylor, Enis Afgan

Conference Proceedings  |  2016  |  Proceedings of the XSEDE16 on Diversity, Big Data, and Science at Scale - XSEDE16

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Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud

Enis Afgan, Clare Sloggett, Nuwan Goonasekera, Igor Makunin, Derek Benson, Mark Crowe, Simon Gladman, Yousef Kowsar, Michael Pheasant, Ron Horst, Andrew Lonie

Journal article  |  2015  |  PLOS ONE

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Cpipe: a shared variant detection pipeline designed for diagnostic settings

Simon P Sadedin, Harriet Dashnow, Paul A James, Melanie Bahlo, Denis C Bauer, Andrew Lonie, Sebastian Lunke, Ivan Macciocca, Jason P Ross, Kirby R Siemering, Zornitza Stark, Susan M White, Graham Taylor, Clara Gaff, Alicia Oshlack, Natalie P Thorne

Journal article  |  2015  |  Genome Medicine

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Digital forensic readiness: Expert perspectives on a theoretical framework

Mohamed Elyas, Atif Ahmad, Sean B Maynard, Andrew Lonie

Journal article  |  2015  |  Computers & Security

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Whole-genome characterization of chemoresistant ovarian cancer

Ann-Marie Patch, Elizabeth L Christie, Dariush Etemadmoghadam, Dale W Garsed, Joshy George, Sian Fereday, Katia Nones, Prue Cowin, Kathryn Alsop, Peter J Bailey, Karin S Kassahn, Felicity Newell, Michael CJ Quinn, Stephen Kazakoff, Kelly Quek, Charlotte Wilhelm-Benartzi, Ed Curry, Huei San Leong, Anne Hamilton, Linda Mileshkin, et al.

Journal article  |  2015  |  Nature

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Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer

Matthew KH Hong, Geoff Macintyre, David C Wedge, Peter Van Loo, Keval Patel, Sebastian Lunke, Ludmil B Alexandrov, Clare Sloggett, Marek Cmero, Francesco Marass, Dana Tsui, Stefano Mangiola, Andrew Lonie, Haroon Naeem, Nikhil Sapre, Pramit M Phal, Natalie Kurganovs, Xiaowen Chin, Michael Kerger, Anne Y Warren, et al.

Journal article  |  2015  |  NATURE COMMUNICATIONS

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Experiences in Implementing Large-Scale Biomedical Workflows on the Cloud: Challenges in Transitioning to the Clinical Domain

S Kanwal, A Lonie, R SINNOTT, C Anderson

Conference Proceedings  |  2015  |  CEUR Workshop Proceedings

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iSRAP - a one-touch research tool for rapid profiling of small RNA-seq data

Camelia Quek, Chol-hee Jung, Shayne A Bellingham, Andrew Lonie, Andrew F Hill

Journal article  |  2015  |  Journal of Extracellular Vesicles

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Challenges of Large-Scale Biomedical Workflows on the Cloud -- A Case Study on the Need for Reproducibility of Results

S Kanwal, A Lonie, RO Sinnott, C Anderson

Conference Proceedings  |  2015  |  2015 IEEE 28th International Symposium on Computer-Based Medical Systems

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Epigenome-wide methylation in DNA from peripheral blood as a marker of risk for breast cancer

Gianluca Severi, Melissa C Southey, Dallas R English, Chol-hee Jung, Andrew Lonie, Catriona McLean, Helen Tsimiklis, John L Hopper, Graham G Giles, Laura Baglietto

Journal article  |  2014  |  BREAST CANCER RESEARCH AND TREATMENT

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Identification of G protein-coupled receptors in Schistosoma haematobium and S. mansoni by comparative genomics

Tulio DL Campos, Neil D Young, Pasi K Korhonen, Ross S Hall, Stefano Mangiola, Andrew Lonie, Robin B Gasser

Journal article  |  2014  |  Parasites & Vectors

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TOWARDS A SYSTEMIC FRAMEWORK FOR DIGITAL FORENSIC READINESS

Mohamed Elyas, Sean B Maynard, Atif Ahviad, Andrew Lonie

Journal article  |  2014  |  Journal of Computer Information Systems

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MINING SURPRISING PATTERNS AND THEIR EXPLANATIONS IN CLINICAL DATA

Yen-Ting Kuo, Andrew Lonie, Adrian R Pearce, Liz Sonenberg

Journal article  |  2014  |  Applied Artificial Intelligence

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Data Interlocking: Coupling analytics to the data

Yousef Kowsar, Harriet Dashnow, Andrew Lonie

Conference Proceedings  |  2014  |  2014 IEEE/ACM 7th International Conference on Utility and Cloud Computing

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Forensic Readiness: Is Your Organisaton Ready?

M Elyas, A Ahmad, SB MAYNARD, A Lonie

Journal article  |  2014  |  Digital Forensics Magazine

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FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets

Bernard J Pope, Nguyen-Dumont Tu, Fabrice Odefrey, Fleur Hammet, Russell Bell, Kayoko Tao, Sean V Tavtigian, David E Goldgar, Andrew Lonie, Melissa C Southey, Daniel J Park

Journal article  |  2013  |  BMC BIOINFORMATICS

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Rare Mutations in XRCC2 Increase the Risk of Breast Cancer

DJ Park, F Lesueur, T Nguyen-Dumont, M Pertesi, F Odefrey, F Hammet, SL Neuhausen, EM John, IL Andrulis, MB Terry, M Daly, S Buys, F Le Calvez-Kelm, A Lonie, BJ Pope, H Tsimiklis, C Voegele, FM Hilbers, N Hoogerbrugge, A Barroso, et al.

Journal article  |  2012  |  American Journal of Human Genetics

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A data clustering approach to discriminating impersonating devices in Wi-Fi networks

Zhiqi Tao, Baikunth Nath, Andrew Lonie

Journal article  |  2010  |  Security and Communication Networks

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Predicting customer behaviour: The University of Melbourne's KDD Cup report

HR MILLER, SJ CLARKE, SE LANE, A LONIE, DC LAZARIDIS, S PETROVSKI, O JONES

Conference Proceedings  |  2009  |  JMLR Workshop and Conference Proceedings

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X-Mode: A real time approach of discriminating Wi-Fi network impersonators

Z Tao, B Nath, A Lonie

Conference Proceedings  |  2008  |  Proceedings of the 4th International Conference on Next Generation Web Services Practices

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Finding explanations for assisting pattern interpretation

YT Kuo, L Sonenberg, A Lonie

Conference Proceedings  |  2008  |  2008 IEEE/WIC/ACM International Conference on Web Intelligence

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A service-oriented Grid environment for integration of distributed kidney models and resources

Xingchen Chu, Andrew Lonie, Peter Harris, Randall Thomas, Rajkumar Buyya

Journal article  |  2008  |  Concurrency and Computation-Practice and Experience

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An Optimal Sensor Architecture for Wi-Fi Intrusion Detection

Z TAO, G NATH, A LONIE

Journal article  |  2008  |  International Journal of Computer Science and Network Security

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Domain ontology driven data mining: A medical case study

YT Kuo, A Lonie, L Sonenberg, K Paizis

Conference Proceedings  |  2007  |  Proceedings of the 2007 international workshop on Domain driven data mining

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KidneyGrid: A Grid Platform for Integration of Distributed Kidney Models and Resources

X CHU, A LONIE, P HARRIS, undefined Thomas, R BUYYA

Conference Proceedings  |  2006  |  Proceedings of the 4th International Workshop on Middleware for Grid Computing

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The Renal Physiome project

S Randall Thomas, Fariza Tahi, Peter Harris, Andrew Lonie

Conference Proceedings  |  2006  |  Biomedical Imaging: Macro to Nano, 2006. 3rd IEEE International Symposium on

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A case study of organisational response to electronic and non-electronic financial crimes

A Lonie, D Wei, S Maynard, T Ruighaver

Conference Proceedings  |  2005  |  Proceedings of the 16th Australasian Conference on Information Systems ACIS 2005

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Towards a web resource for quantitative renal physiology

R Thomas, undefined Layton, undefined Layton, P HARRIS, A LONIE, undefined Moore

Journal article  |  2005  |  Journal of Physiology

38

Scholarly Works

Keyword Analysis

Computer Software and Services
Expanding Knowledge
Information Systems
Oncology and Carcinogenesis
Clinical Health (organs, Diseases and Abnormal Conditions)
Computer Software
Genetics
Health and Support Services
Library and Information Studies
Communications Technologies

News

Displaying the most recent news article by Andrew Lonie.

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Why Big Data is a Big Deal

Vicky Schneider, Andrew Lonie

March 24, 2016

1

News Articles

Honours, Awards and Fellowships

1990

Australian PhD Priority Scholarship

Australian Government

1

Award

Credentials

Positions

Director, Bioinformatics Commons & Senior Advisor

Medicine, Dentistry And Health Sciences

Education

Graduate Diploma

Adelaide University

Doctor of Philosophy

Adelaide University