Dr Louise M Judd
Lead Laboratory Scientist and Genomics Trainer
Department of Microbiology and Immunology
135 Scholarly works
8 Projects
HIGHLIGHTS
2026
Research contracts (non-grants)
Agreement for the Performance of Work With WHO to Support the Further Refinement, Socialization and Publication of the Tools to Support Genomic Implementation Globally
2025
Journal article
Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi
DOI: 10.1186/s13073-025-01551-42025
Journal article
Genomic and functional analysis of rmp locus variants in Klebsiella pneumoniae
DOI: 10.1186/s13073-025-01461-52025
Journal article
Invasive Streptococcus dysgalactiae subspecies equisimilis compared with Streptococcus pyogenes in Australia, 2011–23, and the emergence of a multi-continent stG62647 lineage: a retrospective clinical and genomic epidemiology study
DOI: 10.1016/j.lanmic.2025.1011822025
Journal article
Comparative and functional genomic analysis of foreign DNA defense mechanisms in Enterococcus faecium
DOI: 10.1128/spectrum.00289-252025
Journal article
Transposon-directed insertion-site sequencing (TraDIS) analysis of Enterococcus faecium using nanopore sequencing and a WebAssembly analysis platform
DOI: 10.1128/spectrum.00628-252023
Research contracts (non-grants)
Post-Operative Oral Microbiome Study
RECENT SCHOLARLY WORKS
2025
Journal article
Are reads required? High-precision variant calling from bacterial genome assemblies
DOI: 10.1099/acmi.0.001025.v32025
Journal article
Dual-use virulence factors of the opportunistic pathogen Chromobacterium haemolyticum mediate hemolysis and colonization
DOI: 10.1128/mbio.03605-242025
Journal article
Extended spectrum beta-lactamase producing Escherichia coli and antimicrobial resistance gene sharing at the interface of human, poultry and environment: results of ESBL tricycle surveillance in Kathmandu, Nepal
DOI: 10.1186/s42522-025-00145-92025
Journal article
The complete genome sequence of the crayfish pathogen Candidatus Paracoxiella cheracis n.g. n.sp. provides insight into pathogenesis and the phylogeny of the Coxiellaceae family
DOI: 10.1128/msphere.01002-242025
Journal article
Targeted sequencing of Enterobacterales bacteria using CRISPR-Cas9 enrichment and Oxford Nanopore Technologies
DOI: 10.1128/msystems.01413-24
RECENT PROJECTS
2010
Research Grant
New Genes and Models for Inflammatory Bowel Disease
2010
Research Grant
New Genes and Models for Inflammatory Bowel Disease
2008
Research Grant
The Role of the Innate Immune System in Stomach Cancer