Prof Alicia Oshlack
Honorary (Professorial Fellow)
The Sir Peter MacCallum Department of Oncology
151 Scholarly works
10 Projects
HIGHLIGHTS
2026
Journal article
Single-cell profiling of BAL in preschool cystic fibrosis reveals macrophage dysregulation and ivacaftor-modified inflammatory programs in the early life lung
DOI: 10.1016/j.mucimm.2026.03.0122026
Research grants (ARC, NHMRC, MRFF)
Transcriptomics at Exquisite Resolution
2023
Research grants (international)
Investigating Transcript Diversity as a Driver of Melanoma Progression and Recurrence
2022
Journal article
STRipy: A graphical application for enhanced genotyping of pathogenic short tandem repeats in sequencing data
DOI: 10.1002/humu.243822021
Research grants (ARC, NHMRC, MRFF)
Harnessing the Power of Single Cell Sequencing to Advance Biomedical Research
2020
Journal article
Accuracy of short tandem repeats genotyping tools in whole exome sequencing data
DOI: 10.12688/f1000research.22639.12018
Journal article
STRetch: Detecting and discovering pathogenic short tandem repeat expansions
DOI: 10.1186/s13059-018-1505-2
RECENT SCHOLARLY WORKS
2026
Journal article
barbieQ: an R software package for analysing barcode count data from clonal tracking experiments
DOI: 10.1093/bioinformatics/btag3972025
Conference Proceedings
3174 – TEMPORAL SINGLE-CLONE ANALYSES REVEAL AN XLR4B-DRIVEN HSPC PROGRAM THAT FACILITATES T-CELL RECONSTITUTION FOLLOWING TRANSPLANTATION
DOI: 10.1016/j.exphem.2025.1051152025
Journal article
Abstract PR019: Characterizing resistance at single cell resolution in HR deficient HGSOC
DOI: 10.1158/1538-7445.ovarian25-pr0192025
Journal article
A systematic benchmark of Nanopore long-read RNA sequencing for transcript-level analysis in human cell lines
DOI: 10.1038/s41592-025-02623-42025
Journal article
Cross-tissue, age-specific flow cytometry reference for immune cells in airway and blood of children
DOI: 10.1016/j.jaci.2024.11.0182024
Journal article
Damsel: analysis and visualisation of DamID sequencing in R
DOI: 10.1093/bioinformatics/btae6952024
Journal article
Analysis of Tandem Repeats in Short-Read Sequencing Data: From Genotyping Known Pathogenic Repeats to Discovering Novel Expansions
DOI: 10.1002/cpz1.700102024
Conference Proceedings
Variants in SART3 cause a novel spliceosomopathy characterised by failure of testis development and neuronal defects