Bacteria have genomes too: sequencing the bacteria to understand the basis and spread of infection

A conjugative plasmid carrying the carbapenem resistance gene bla(OXA-23) in AbaR4 in an extensively resistant GC1 Acinetobacter baumannii isolate

Mohammad Hamidian, Johanna J Kenyon, Kathryn E Holt, Derek Pickard, Ruth M Hall

2014-10-01

Analysis of Salmonella enterica Serovar Typhimurium Variable-Number Tandem-Repeat Data for Public Health Investigation Based on Measured Mutation Rates and Whole-Genome Sequence Comparisons

Karolina Dimovski, Hanwei Cao, Odilia LC Wijburg, Richard A Strugnell, Radha K Mantena, Margaret Whipp, Geoff Hogg, Kathryn E Holt

2014-08-01

A GC1 Acinetobacter baumannii isolate carrying AbaR3 and the aminoglycoside resistance transposon TnaphA6 in a conjugative plasmid

Mohammad Hamidian, Kathryn E Holt, Derek Pickard, Gordon Dougan, Ruth M Hall

2014-04-01

Adaptive Change Inferred from Genomic Population Analysis of the ST93 Epidemic Clone of Community-Associated Methicillin-Resistant Staphylococcus aureus

Timothy P Stinear, Kathryn E Holt, Kyra Chua, Justin Stepnell, Kellie L Tuck, Geoffrey Coombs, Paul Francis Harrison, Torsten Seemann, Benjamin P Howden

2014-01-01

Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm

Jane Hawkey, David J Edwards, Karolina Dimovski, Lester Hiley, Helen Billman-Jacobe, Geoff Hogg, Kathryn E Holt

2013-11-19

Tracking the establishment of local endemic populations of an emergent enteric pathogen

Kathryn E Holt, Vu Thieu Nga Tran, Pham Thanh Duy, Vinh Ha, Dong Wook Kim, Phan Vu Tra My, James I Campbell, Van Minh Hoang Nguyen, Thanh Vinh Nguyen, Van Minh Pham, Thu Thuy Cao, Thi Thu Nga Tran, Corinne Thompson, Thi Ngoc Dung Tran, Thi Khanh Nhu Nguyen, Voong Vinh Phat, Thi Ngoc Tuyet Pham, Le Phuc Hoang, Thi Nam Lien Nguyen, Duc Phu Bui

2013-10-22

Identification of Salmonella enterica Serovar Typhi Genotypes by Use of Rapid Multiplex Ligation-Dependent Probe Amplification

Pham Thanh Duy, Tran Vu Thieu Nga, Tran Thuy Chau, Martin Loden, Kiki Tuin, James I Campbell, Van Minh Hoang Nguyen, Voong Vinh Phat, Jeremy J Farrar, Kathryn E Holt, Gordon Dougan, Stephen Baker

2013-09-01

Genomic Insights to Control the Emergence of Vancomycin-Resistant Enterococci

Benjamin P Howden, Kathryn E Holt, Margaret MC Lam, Torsten Seemann, Susan Ballard, Geoffrey W Coombs, Steven YC Tong, M Lindsay Grayson, Paul DR Johnson, Timothy P Stinear

2013-07-01

Global Phylogeny of Shigella sonnei Strains from Limited Single Nucleotide Polymorphisms (SNPs) and Development of a Rapid and Cost-Effective SNP-Typing Scheme for Strain Identification by High-Resolution Melting Analysis

Vartul Sangal, Kathryn E Holt, Jianfeng Yuan, Derek J Brown, Ingrid Filliol-Toutain, Francois-Xavier Weill, Dong-Wook Kim, Wanderley Dias da Silveira, Derek Pickard, Nicholas R Thomson, Julian Parkhill, Jun Yu

2013-01-01

Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe

Kathryn E Holt, Stephen Baker, Francois-Xavier Weill, Edward C Holmes, Andrew Kitchen, Jun Yu, Vartul Sangal, Derek J Brown, John E Coia, Dong Wook Kim, Seon Young Choi, Su Hee Kim, Wanderley D da Silveira, Derek J Pickard, Jeremy J Farrar, Julian Parkhill, Gordon Dougan, Nicholas R Thomson

2012-09-01

Short read sequence typing (SRST): multi-locus sequence types from short reads

Michael Inouye, Thomas C Conway, Justin Zobel, Kathryn E Holt

2012-07-24

On the origin of Mycobacterium ulcerans, the causative agent of Buruli ulcer

Kenneth D Doig, Kathryn E Holt, Janet AM Fyfe, Caroline J Lavender, Miriam Eddyani, Francoise Portaels, Dorothy Yeboah-Manu, Gerd Pluschke, Torsten Seemann, Timothy P Stinear

2012-06-19

High-Resolution Genotyping of the Endemic Salmonella Typhi Population during a Vi (Typhoid) Vaccination Trial in Kolkata

Kathryn E Holt, Shanta Dutta, Byomkesh Manna, Sujit K Bhattacharya, Barnali Bhaduri, Derek J Pickard, R Leon Ochiai, Mohammad Ali, John D Clemens, Gordon Dougan

2012-01-01