Journal article

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data

Jane Hawkey, Mohammad Hamidian, Ryan R Wick, David J Edwards, Helen Billman-Jacobe, Ruth M Hall, Kathryn E Holt

BMC GENOMICS | BIOMED CENTRAL LTD | Published : 2015

DOI: 10.1186/s12864-015-1860-2

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Related Projects (2)

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Identifying Key Players In The Spread Of Antimicrobial Resistance

Antibiotic drugs are essential to treat bacterial infections. However some bacteria have genes that allow them to resist certain drugs, whic..

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Identifying Key Players In The Spread Of Antimicrobial Resistance

Antibiotic drugs are essential to treat bacterial infections. However some bacteria have genes that allow them to resist certain drugs, whic..

Grants

Awarded by National Health and Medical Research Council of Australia

Awarded by Victorian Life Sciences Computation Initiative (VLSCI)

Funding Acknowledgements

This work was supported by the National Health and Medical Research Council of Australia (Fellowship #1061409 to KEH; Project Grant #1043830 to KEH and RMH) and the Victorian Life Sciences Computation Initiative (VLSCI, #VR0082).

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Keywords

Software
Mycobacterium Tuberculosis
Bacteria
Antimicrobial Resistance
Sequence Analysis, Dna
Structural Variation
Genome, Bacterial
Is6110
Element
Insertion Sequence (is)
Reproducibility of Results
Acinetobacter Baumannii
Ampc Gene
Escherichia-Coli
Tuberculosis
Acinetobacter-Baumannii
Genetics & Heredity
Mycobacterium-Tuberculosis
Activation
Epidemic Strains
Molecular Sequence Data
Computer Simulation
Mutagenesis, Insertional
Transposases
Biotechnology & Applied Microbiology
Drug Resistance, Microbial
Science & Technology
Cephalosporin Resistance
Base Sequence
Genomics
Short Read Analysis
Life Sciences & Biomedicine
Polymerase Chain Reaction