Journal article

1001 Proteomes: a functional proteomics portal for the analysis of Arabidopsis thaliana accessions

Hiren J Joshi, Katy M Christiansen, Joffrey Fitz, Jun Cao, Anna Lipzen, Joel Martin, A Michelle Smith-Moritz, Len A Pennacchio, Wendy S Schackwitz, Detlef Weigel, Joshua L Heazlewood

Bioinformatics | OXFORD UNIV PRESS | Published : 2012

Abstract

MOTIVATION: The sequencing of over a thousand natural strains of the model plant Arabidopsis thaliana is producing unparalleled information at the genetic level for plant researchers. To enable the rapid exploitation of these data for functional proteomics studies, we have created a resource for the visualization of protein information and proteomic datasets for sequenced natural strains of A. thaliana. RESULTS: The 1001 Proteomes portal can be used to visualize amino acid substitutions or non-synonymous single-nucleotide polymorphisms in individual proteins of A. thaliana based on the reference genome Col-0. We have used the available processed sequence information to analyze the conservati..

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University of Melbourne Researchers

Grants

Awarded by Office of Science, Office of Biological and Environmental Research of the US Department of Energy


Awarded by Office of Science of the US Department of Energy


Funding Acknowledgements

The work conducted by the Joint BioEnergy Institute was supported by the Office of Science, Office of Biological and Environmental Research of the US Department of Energy under Contract No. DE-AC02-05CH11231. The work conducted by the US Department of Energy Joint Genome Institute is supported by the Office of Science of the US Department of Energy under Contract No. DE-AC02-05CH11231. Work on the 1001 Genomes project in the Weigel lab is supported by a Gottfried Wilhelm Leibniz Award of the Deutsche Forschungsgemeinschaft and by the Max Planck Society.