Heterogeneity of archaeal and bacterial ammonia-oxidizing communities in Lake Taihu, China

Abstract

Ammonia-oxidizing archaea (AOA) and bacteria (AOB) communities within the surface sediments of Lake Taihu, a large eutrophic freshwater lake in China, were investigated using molecular approaches targeting the ammonia monooxygenase subunit A (amoA) gene. Large intra-lake variability in the composition and the relative abundance of both groups of ammonia-oxidizing prokaryotes was observed. Archaeal amoA far outnumbered bacterial amoA at most sites except those located in the Eastern Taihu Bay. This bay, which is used for intensive pen aquaculture, harboured the most unique AOA communities but was dominated by AOB in terms of relative abundance. Accumulation of organic substances rather than p..