Global phylogeography and evolutionary history of Shigella dysenteriae type 1

Elisabeth Njamkepo; Nizar Fawal; Alicia Tran-Dien; Jane Hawkey; Nancy Strockbine; Claire Jenkins; Kaisar A Talukder; Raymond Bercion; Konstantin Kuleshov; Renata Kolinska; Julie E Russell; Lidia Kaftyreva; Marie Accou-Demartin; Andreas Karas; Olivier Vandenberg; Alison E Mather; Carl J Mason; Andrew J Page; Thandavarayan Ramamurthy; Chantal Bizet; Andrzej Gamian; Isabelle Carle; Amy Gassama Sow; Christiane Bouchier; Astrid Louise Wester; Monique Lejay-Collin; Marie-Christine Fonkoua; Simon Le Hello; Martin J Blaser; Cecilia Jernberg; Corinne Ruckly; Audrey Merens; Anne-Laure Page; Martin Aslett; Peter Roggentin; Angelika Fruth; Erick Denamur; Malabi Venkatesan; Herve Bercovier; Ladaporn Bodhidatta; Chien-Shun Chiou; Dominique Clermont; Bianca Colonna; Svetlana Egorova; Gururaja P Pazhani; Analia V Ezernitchi; Ghislaine Guigon; Simon R Harris; Hidemasa Izumiya; Agnieszka Korzeniowska-Kowal; Anna Lutynska; Malika Gouali; Francine Grimont; Celine Langendorf; Monika Marejkova; Lorea AM Peterson; Guillermo Perez-Perez; Antoinette Ngandjio; Alexander Podkolzin; Erika Souche; Mariia Makarova; German A Shipulin; Changyun Ye; Helena Zemlickova; Mria Herpay; Patrick AD Grimont; Julian Parkhill; Philippe Sansonetti; Kathryn E Holt; Sylvain Brisse; Nicholas R Thomson; Francois-Xavier Weill

Journal article

Global phylogeography and evolutionary history of Shigella dysenteriae type 1

Elisabeth Njamkepo, Nizar Fawal, Alicia Tran-Dien, Jane Hawkey, Nancy Strockbine, Claire Jenkins, Kaisar A Talukder, Raymond Bercion, Konstantin Kuleshov, Renata Kolinska, Julie E Russell, Lidia Kaftyreva, Marie Accou-Demartin, Andreas Karas, Olivier Vandenberg, Alison E Mather, Carl J Mason, Andrew J Page, Thandavarayan Ramamurthy, Chantal Bizet Show all

Nature Microbiology | NATURE PUBLISHING GROUP | Published : 2016

DOI: 10.1038/NMICROBIOL.2016.27

University of Melbourne Researchers

Kathryn Holt Author Biochemistry and Molecular Biology

Grants

Awarded by French government's Investissement d'Avenir programme, Laboratoire d'Excellence 'Integrative Biology of Emerging Infectious Diseases'

Awarded by Wellcome Trust

Awarded by NHMRC of Australia

Awarded by Victorian Life Sciences Computation Initiative (VLSCI)

Funding Acknowledgements

This study was supported by the Institut Pasteur and the Institut Pasteur International Network, the Institut de Veille Sanitaire, the French government's Investissement d'Avenir programme, Laboratoire d'Excellence 'Integrative Biology of Emerging Infectious Diseases' (grant no. ANR-10-LABX-62-IBEID), the Fondation 'Le Roch-Les Mousquetaires', the Canetti family through the Georges, Jacques et Elias Canetti Award 2013, the Wellcome Trust through grant 098051 to the Sanger Institute, the NHMRC of Australia (grant 1061409 to K.E.H), the Victorian Life Sciences Computation Initiative (VLSCI) (grant VR0082) and the Indian Council of Medical Research, New Delhi, India. The authors thank A. Dautry-Versat, A.P. Pugsley, C. Brechot and J. Savall fur their support; T. Hieu, C. Soto, E. Bourreterre and B. Faye for technical assistance; Z. Szabo, D. Tremblay for providing isolates; L.R. Hiltzik, N. Baldwin and C. Mackenzie for their searches of the archives; M. Toucas, H. d'Hauteville, E. Aldova, S. Formal, and A.T. Maurelli for information about isolates; D. Nedelec for discussion, I. Gut, M. Gut, L. Ma, D. Harris, K. Oliver and the sequencing teams at the Institut Pasteur and Wellcome Trust Sanger Institute for sequencing the samples. The views expressed in this publication are those of the authors and do not reflect the views of the US Department of the Army or Department of Defense. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.