SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments
Andrew J Page, Ben Taylor, Aidan J Delaney, Jorge Soares, Torsten Seemann, Jacqueline A Keane, Simon R Harris
Microbial Genomics | MICROBIOLOGY SOC | Published : 2016
Awarded by Wellcome Trust
Thanks to Pierre Lindenbaum and Philip Ashton for reviewing the paper and providing valuable feedback. Thanks to Sascha Steinbiss, Andreas Tille and Nicholas J. Croucher for their assistance and advice. Thanks to Vanessa Wong and Kathryn Holt for providing the S. Typhi dataset. This work was supported by the Wellcome Trust (grant WT 098051).