Journal article

Duplicates, redundancies, and inconsistencies in the primary nucleotide databases: a descriptive study

Qingyu Chen, Justin Zobel, Karin Verspoor

Published : 2016

Abstract

Abstract GenBank, the EMBL European Nucleotide Archive, and the DNA DataBank of Japan, known collectively as the International Nucleotide Sequence Database Collaboration or INSDC, are the three most significant nucleotide sequence databases. Their records are derived from laboratory work undertaken by different individuals, by different teams, with a range of technologies and assumptions, and over a period of decades. As a consequence, they contain a great many duplicates, redundancies, and inconsistencies, but neither the prevalence nor the characteristics of various types of duplicates have been rigorously assessed. Existing duplicate detection methods in bioinformatics only address specif..

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