scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data

Luyi Tian; Shian Su; Xueyi Dong; Daniela Amann-Zalcenstein; Christine Biben; Azadeh Seidi; Douglas J Hilton; Shalin H Naik; Matthew E Ritchie

Journal article

scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data

Luyi Tian, Shian Su, Xueyi Dong, Daniela Amann-Zalcenstein, Christine Biben, Azadeh Seidi, Douglas J Hilton, Shalin H Naik, Matthew E Ritchie

PLoS Computational Biology | PUBLIC LIBRARY SCIENCE | Published : 2018

DOI: 10.1371/journal.pcbi.1006361

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University of Melbourne Researchers

Douglas Hilton Author Medical Biology (W.E.H.I.)

Christine Biben Author Medical Biology (W.E.H.I.)

Matthew Ritchie Author Medical Biology (W.E.H.I.)

Shalin Naik Author Medical Biology (W.E.H.I.)

Daniela Amann-Zalcenstein Author Medical Biology (W.E.H.I.)

Grants

Awarded by National Health and Medical Research Council (NHMRC)

Awarded by Silicon Valley Community Foundation

Funding Acknowledgements

This work was supported by the National Health and Medical Research Council (NHMRC) Project Grants (GNT1143163 to MER, GNT1124812 to SHN and MER, GNT1062820 to SHN), Fellowship GNT1104924 to MER, the Chan Zuckerberg Initiative DAF, an advised fund of Silicon Valley Community Foundation (grant number 2018-182819 to MER), a Melbourne Research Scholarship to LT, Genomics Innovation Hub, Victorian State Government Operational Infrastructure Support and Australian Government NHMRC IRIISS. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.