Stemformatics: visualize and download curated stem cell data
Jarny Choi, Chris M Pacheco, Rowland Mosbergen, Othmar Korn, Tyrone Chen, Isha Nagpal, Steve Englart, Paul W Angel, Christine A Wells
NUCLEIC ACIDS RESEARCH | OXFORD UNIV PRESS | Published : 2019
Stemformatics is an established gene expression data portal containing over 420 public gene expression datasets derived from microarray, RNA sequencing and single cell profiling technologies. Developed for the stem cell community, it has a major focus on pluripotency, tissue stem cells, and staged differentiation. Stemformatics includes curated 'collections' of data relevant to cell reprogramming, as well as hematopoiesis and leukaemia. Rather than simply rehosting datasets as they appear in public repositories, Stemformatics uses a stringent set of quality control metrics and its own pipelines to process handpicked datasets from raw files. This means that about 30% of datasets processed by ..View full abstract
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Awarded by Australian Research Council special research initiative
Awarded by Future Fellowship from the Australian Research Council
Australian Research Council special research initiative to Stem Cells Australia [SRI110001002]; Future Fellowship from the Australian Research Council [FT150100330]; JEM Research Foundation to the Stem Cell Atlas. Funding for open access charge: Australian Research Council special research initiative to Stem Cells Australia.