Conference Proceedings

Automated framework to reconstruct 3D model of cardiac Z-disk: an image processing approach

Eric Hanssen, V Rajagopal, Afshin Khadankishandi

Proceedings. IEEE International Conference on Bioinformatics and Biomedicine | IEEE | Published : 2018

Abstract

The Z-disk or Z-line is located at the lateral borders of sarcomere, the fundamental unit of striated muscle. They provide mechanical stability and can boost contractility of cardiac myocytes. In this paper, we propose to generate a 3D model of Z-disks within single adult cardiac cells from an automated segmentation of a large serial-block-face scanning electron microscopy (SBF-SEM) dataset. The proposed fully automated segmentation scheme is comprised of three main modules including “pre-processing”, “segmentation” and “refinement”. We represent a timely-efficient, simple, yet effective model to perform segmentation and refinement steps. Contrast stretching, and Gaussian kernels are used to..

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