Journal article

Genomics for Molecular Epidemiology and Detecting Transmission of Carbapenemase-Producing Enterobacterales in Victoria, Australia, 2012 to 2016

Norelle L Sherry, Courtney R Lane, Jason C Kwong, Mark Schultz, Michelle Sait, Kerrie Stevens, Susan Ballard, Anders Goncalves da Silva, Torsten Seemann, Claire L Gorrie, Timothy P Stinear, Deborah A Williamson, Judith Brett, Annaliese van Diemen, Marion Easton, Benjamin P Howden

Journal of Clinical Microbiology | AMER SOC MICROBIOLOGY | Published : 2019

Abstract

Background Carbapenemase-producing Enterobacterales (CPE) are being increasingly reported in Australia, and integrated clinical and genomic surveillance is critical to effectively manage this threat. We sought to systematically characterize CPE in Victoria, Australia from 2012-2016. Methods Suspected CPE were referred to the state public health laboratory in Victoria, Australia from 2012-2016, and examined using phenotypic, multiplex PCR, and whole genome sequencing (WGS) methods, and compared with epidemiological metadata. Results Carbapenemase genes were detected in 361 isolates..

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Grants

Awarded by National Health and Medical Research Council (NHMRC)


Funding Acknowledgements

This work is supported by the National Health and Medical Research Council (NHMRC) through a partnership grant (GNT1149991), individual supporting grants (GNT1142613 to J.C.K., GNT1008549 to T.P.S., GNT1123854 to D.A.W., and GNT1105905 to B.P.H.), and a research grant (to N.L.S. and J.C.K.) from the Australian Society for Antimicrobials. N.L.S. and C.R.L. are supported by Australian Government Research Training Program (RTP) scholarships.