Strong selection pressures maintain divergence on genomic islands in Atlantic cod (Gadus morhua L.) populations

Abstract

Background: Two distinct populations have been extensively studied in Atlantic cod (Gadus morhua L.): the Northeast Arctic cod (NEAC) population and the coastal cod (CC) population. The objectives of the current study were to identify genomic islands of divergence and to propose an approach to quantify the strength of selection pressures using whole-genome single nucleotide polymorphism (SNP) data. After applying filtering criteria, information on 93 animals (9 CC individuals, 50 NEAC animals and 34 CC × NEAC crossbred individuals) and 3,123,434 autosomal SNPs were used. Results: Four genomic islands of divergence were identified on chromosomes 1, 2, 7 and 12, which were mapped accurately ba..