Journal article
BioHackathon series in 2013 and 2014: Improvements of semantic interoperability in life science data and services
T Katayama, S Kawashima, G Micklem, S Kawano, JD Kim, S Kocbek, S Okamoto, Y Wang, H Wu, A Yamaguchi, Y Yamamoto, E Antezana, KF Aoki-Kinoshita, K Arakawa, M Banno, J Baran, JT Bolleman, RJP Bonnal, H Bono, JT Fernández-Breis Show all
F1000Research | Published : 2019
Abstract
Publishing databases in the Resource Description Framework (RDF) model is becoming widely accepted to maximize the syntactic and semantic interoperability of open data in life sciences. Here we report advancements made in the 6th and 7th annual BioHackathons which were held in Tokyo and Miyagi respectively. This review consists of two major sections covering: 1) improvement and utilization of RDF data in various domains of the life sciences and 2) meta-data about these RDF data, the resources that store them, and the service quality of SPARQL Protocol and RDF Query Language (SPARQL) endpoints. The first section describes how we developed RDF data, ontologies and tools in genomics, proteomics..
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