Journal article
Analysis of transcriptome in hickory (Carya cathayensis), and uncover the dynamics in the hormonal signaling pathway during graft process
Lingling Qiu, Bo Jiang, Jia Fang, Yike Shen, Zhongxiang Fang, Saravana RM Kumar, Keke Yi, Chenjia Shen, Daoliang Yan, Bingsong Zheng
BMC GENOMICS | BIOMED CENTRAL LTD | Published : 2016
Abstract
BACKGROUND: Hickory (Carya cathayensis), a woody plant with high nutritional and economic value, is widely planted in China. Due to its long juvenile phase, grafting is a useful technique for large-scale cultivation of hickory. To reveal the molecular mechanism during the graft process, we sequenced the transcriptomes of graft union in hickory. RESULTS: In our study, six RNA-seq libraries yielded a total of 83,676,860 clean short reads comprising 4.19 Gb of sequence data. A large number of differentially expressed genes (DEGs) at three time points during the graft process were identified. In detail, 777 DEGs in the 7 d vs 0 d (day after grafting) comparison were classified into 11 enriched G..
View full abstractGrants
Awarded by National Natural Science Foundation of China
Awarded by Zhejiang Provincial Natural Science Foundation for Distinguished Young Scholar
Awarded by Open Foundation of Top Key Discipline of Forestry, Zhejiang Province
Awarded by Scientific Research Foundation for the Returned Overseas Chinese Scholars, State Education Ministry
Awarded by National High Technology Research and Development Program of China (863 Program)
Awarded by Fruit Innovation Team Project of Zhejiang Province
Funding Acknowledgements
This study was supported by National Natural Science Foundation of China (31070604, 31270716 and 31470683); Zhejiang Provincial Natural Science Foundation for Distinguished Young Scholar (LR13C160001); Open Foundation of Top Key Discipline of Forestry, Zhejiang Province (KF201314); Pre-research Foundation of Center for Cultivation of Subtropical Forest Resources (CCSFR), Zhejiang A & F University; Scientific Research Foundation for the Returned Overseas Chinese Scholars, State Education Ministry ([2009]1341); National High Technology Research and Development Program of China (863 Program) (2013AA102605); Fruit Innovation Team Project of Zhejiang Province (2009R50033).