Journal article

Accuracy of short tandem repeats genotyping tools in whole exome sequencing data

Andreas Halman, Alicia Oshlack

Published : 2020

Abstract

Abstract Background Short tandem repeats are important source of genetic variation, they are highly mutable and repeat expansions are associated dozens of human disorders, such as Huntington’s disease and spinocerebellar ataxias. Technical advantages in sequencing technology have made it possible to analyse these repeats at large scale, however, accurate genotyping is still a challenging task. We compared four different short tandem repeats genotyping tools on whole exome sequencing data to determine their genotyping performance and limits which will aid other researchers to choose a suitable tool and parameters for analysis. Methods The analysis was performed on the Simons Simplex Collectio..

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