Short read sequence typing (SRST): multi-locus sequence types from short reads
Michael Inouye, Thomas C Conway, Justin Zobel, Kathryn E Holt
BMC Genomics | BMC | Published : 2012
Related Projects (2)
Awarded by Science Foundation of Ireland
Awarded by NHMRC of Australia
Awarded by Victorian Life Sciences Computation Initiative (VLSCI)
This work utilised publicly available MLST databases for Salmonella and E. coli (http://mlst.ucc.ie, supported by a grant from the Science Foundation of Ireland (05/FE1/B882)), for S. aureus and S. pneumoniae (http://www.mlst.net, supported by the Wellcome Trust), and for plasmids (http://pubmlst.org/plasmid/). Data for all schemes was retrieved from the collation at http://pubmlst.org (University of Oxford), the development of which has been funded by the Wellcome Trust. KEH, MI were supported by fellowships #628930, #637400 from the NHMRC of Australia; National ICT Australia (NICTA) is funded by the Australian Government's Department of Communications, Information Technology and the Arts, Australian Research Council through Backing Australia's Ability, ICT Centre of Excellence programs. This research was supported by a Victorian Life Sciences Computation Initiative (VLSCI) grant #VR0082.