Journal article
OpenCMISS: A multi-physics & multi-scale computational infrastructure for the VPH/Physiome project
C Bradley, A Bowery, R Britten, V Budelmann, O Camara, R Christie, A Cookson, AF Frangi, TB Gamage, T Heidlauf, S Krittian, D Ladd, C Little, K Mithraratne, M Nash, D Nickerson, P Nielsen, Ø Nordbø, S Omholt, A Pashaei Show all
Progress in Biophysics and Molecular Biology | PERGAMON-ELSEVIER SCIENCE LTD | Published : 2011
Abstract
The VPH/Physiome Project is developing the model encoding standards CellML (cellml.org) and FieldML (fieldml.org) as well as web-accessible model repositories based on these standards (models.physiome.org). Freely available open source computational modelling software is also being developed to solve the partial differential equations described by the models and to visualise results. The OpenCMISS code (opencmiss.org), described here, has been developed by the authors over the last six years to replace the CMISS code that has supported a number of organ system Physiome projects.OpenCMISS is designed to encompass multiple sets of physical equations and to link subcellular and tissue-level bio..
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Awarded by National Institutes of Health
Funding Acknowledgements
C. Bradley, D. Paterson and P. Hunter acknowledge the support of the Wellcome Trust for the Cardiac Physiome Project. Work partially funded by the European Commission under the euHeart's Integrated Project (FP7-ICT-2007-224485) and by the Spanish Ministry of Science and Innovation under the cvREMOD CENIT Project (CEN20091044). A. Frangi holds an ICREA-Academia Prize from the Institucio Catalana de Recerca i Estudis Avancats (ICREA). V. Rajagopal acknowledges the support of a RSNZ Marsden Fast Start Grant.