Journal article
Visualising associations between paired 'omics' data sets
I González, KAL Cao, MJ Davis, S Déjean
Biodata Mining | BMC | Published : 2012
Open access
Abstract
Background: Each omics platform is now able to generate a large amount of data. Genomics, proteomics, metabolomics, interactomics are compiled at an ever increasing pace and now form a core part of the fundamental systems biology framework. Recently, several integrative approaches have been proposed to extract meaningful information. However, these approaches lack of visualisation outputs to fully unravel the complex associations between different biological entities. Results: The multivariate statistical approaches 'regularized Canonical Correlation Analysis' and 'sparse Partial Least Squares regression' were recently developed to integrate two types of highly dimensional 'omics' data and t..
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Funding Acknowledgements
We would like to thank Dr. Pierre Bushel (National Institute of Environmental Health Sciences) for his assistance on the Liver Toxicity study and Dr. Pascal Martin (Institut National de la Recherche Agronomique) for his feedback on the Nutrimouse study. This work was supported, in part, by the Wound Management Innovation CRC to KALC (established and supported under the Australian Government's Cooperative Research Centres Program).