Journal article

Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters

Christopher Funk, William Baumgartner, Benjamin Garcia, Christophe Roeder, Michael Bada, K Bretonnel Cohen, Lawrence E Hunter, Karin Verspoor

BMC Bioinformatics | BMC | Published : 2014


Awarded by NIH

Awarded by NSF

Funding Acknowledgements

This work was supported by NIH grant 2T15LM009451 to LEH and NSF grant DBI-0965616 to KV. KV was also supported by National ICT Australia (NICTA). NICTA is funded by the Australian Government as represented by the Department of Broadband, Communications and the Digital Economy and the Australian Research Council through the ICT Centre of Excellence program. We would like to acknowledge Helen Johnson and Cesar Mejia Munoz for executing early versions of these experiments. We also appreciate Willie Rogers from NLM with help getting MetaMap to work with ontologies other than those in the UMLS.