Journal article

Exploring Species-Based Strategies for Gene Normalization

Karin Verspoor, Christophe Roeder, Helen L Johnson, K Bretonnel Cohen, William A Baumgartner, Lawrence E Hunter

IEEE - ACM Transactions on Computational Biology and Bioinformatics | IEEE COMPUTER SOC | Published : 2010


Awarded by NIH

Funding Acknowledgements

This work was supported by the NIH grants 5R01LM009254 and 2R01LM008111 to Lawrence Hunter and grant 1R01LM010120-01 to Karin Verspoor. The authors would also like to thank Florian Leitner at CNIO for his patience in responding to myriad questions about the evaluation. They would also like to thank Fabio Rinaldi who shared mappings from species names listed in the Cell Line Knowledge Base to NCBI Taxonomy identifiers. They would also like to thank their undergraduate research intern Cesar Mejia Munoz for his assistance in exploring the parameter space of the system, and their collaborator Philip Ogren for use of his coordination analysis module.