Journal article

Deciphering clonality in aneuploid breast tumors using SNP array and sequencing data

Ingrid M Loennstedt, Franco Caramia, Jason Li, Debora Fumagalli, Roberto Salgado, Andrew Rowan, Max Salm, Nnennaya Kanu, Peter Savas, Stuart Horswell, Stephan Gade, Sibylle Loibl, Patrick Neven, Christos Sotiriou, Charles Swanton, Sherene Loi, Terence P Speed

Genome Biol | BMC | Published : 2014


Awarded by European Union

Awarded by Cancer Research UK

Funding Acknowledgements

We thank Henrik Bengtsson at University of California, San Fransisco, USA and Pierre Neuvial, CNRS, France for useful discussions on BAF bias, and Henrik also for advice on using the aroma. affymetrix and PSCBS R packages. We also like to acknowledge Marcus Mayrhofer at Uppsala University, Sweden for introducing us to two dimensional patterns in SNP array data in the form of TAPS plots. This project was supported by European Union FP/project 'RESPONSIFY' No 278659. ShL was supported by Cancer Council Victoria. TPS was supported by NHMRC Australia Fellowship.