A common channel-forming motif in evolutionarily distant porins

Abstract

Four new crystal packings of Escherichia coli porins are presented (phosphoporin, maltoporin, and two crystal forms of matrix porin). These were determined by molecular replacement methods using a polyalanine trial model acquired from the refined coordinates of porin from Rhodobacter capsulatus. The successful molecular replacement shows that the dominant motif found in R. capsulatus porin (a 16-stranded antiparallel (β-barrel) also applies to the E. coli porins, despite the lack of significant amino acid sequence homology. A 30°-40° tilt of the β-strands with respect to the membrane normal was derived from the intensity distributions in the X-ray diffraction patterns for each porin studied,..