Journal article

Identification of a common variant with potential pleiotropic effect on risk of inflammatory bowel disease and colorectal cancer

Hamed Khalili, Jian Gong, Hermann Brenner, Thomas R Austin, Carolyn M Hutter, Yoshifumi Baba, John A Baron, Sonja I Berndt, Stephane Bezieau, Bette Caan, Peter T Campbell, Jenny Chang-Claude, Stephen J Chanock, Constance Chen, Li Hsu, Shuo Jiao, David V Conti, David Duggan, Charles S Fuchs, Manish Gala Show all

Carcinogenesis | OXFORD UNIV PRESS | Published : 2015

Grants

Awarded by National Institute of Diabetes and Digestive and Kidney Diseases


Awarded by National Cancer Institute, National Institutes of Health, U.S. Department of Health and Human Services


Awarded by National Institutes of Health


Awarded by National Cancer Institute, National Institutes of Health


Awarded by National Institutes of Health: Australasian Colorectal Cancer Family Registry


Awarded by National Institutes of Health: Familial Colorectal Neoplasia Collaborative Group


Awarded by National Institutes of Health: Mayo Clinic Cooperative Family Registry for Colon Cancer Studies


Awarded by National Institutes of Health: Ontario Registry for Studies of Familial Colorectal Cancer


Awarded by National Institutes of Health: Seattle Colorectal Cancer Family Registry


Awarded by National Institutes of Health: University of Hawaii Colorectal Cancer Family Registry


Awarded by German Research Council (Deutsche Forschungsgemeinschaft)


Awarded by German Federal Ministry of Education and Research


Awarded by National Institutes of Health (NIH), Genes, Environment and Health Initiative (GEI)


Awarded by NIH


Awarded by NIH GEI


Awarded by National Heart, Lung, and Blood Institute, National Institutes of Health, U.S. Department of Health and Human Services



Funding Acknowledgements

Funded by R01 CA137178, R01 CA050385, R01 CA151993, P01 CA87969, P30 DK043351, P50 CA127003, UM1 CA 167552, UM1 CA186107, K23 DK099681, K24 [DK]098311, K07 CA190673 and K07 CA148894. Senior investigator grant from the Crohn's and Colitis Foundation of America (CCFA) to A.T.C. A career development award from the American Gastroenterological Association (AGA) and by National Institute of Diabetes and Digestive and Kidney Diseases (K23 DK099681 to H.K.).GECCO: National Cancer Institute, National Institutes of Health, U.S. Department of Health and Human Services (U01 CA137088; R01 CA059045).ASTERISK: a Hospital Clinical Research Program (PHRC) and supported by the Regional Council of Pays de la Loire, the Groupement des Entreprises Francaises dans la Lutte contre le Cancer (GEFLUC), the Association Anne de Bretagne Genetique and the Ligue Regionale Contre le Cancer (LRCC).COLO2&3: National Institutes of Health (R01 CA60987).CCFR: National Institutes of Health (UM1 CA167551) and through cooperative agreements with members of the Colon Cancer Family Registry and P.I.s. This genome wide scan was supported by the National Cancer Institute, National Institutes of Health by U01 CA122839 and R01 CA143237 to G.C. The content of this manuscript does not necessarily reflect the views or policies of the National Cancer Institute or any of the collaborating centers in the CFRs, nor does mention of trade names, commercial products or organizations imply endorsement by the US Government or the CFR. The following CFR centers contributed data to this manuscript and were supported by National Institutes of Health: Australasian Colorectal Cancer Family Registry (U01/U24 CA097735), Familial Colorectal Neoplasia Collaborative Group (U01/U24 CA074799), Mayo Clinic Cooperative Family Registry for Colon Cancer Studies (U01/U24 CA074800), Ontario Registry for Studies of Familial Colorectal Cancer (U01/U24 CA074783), Seattle Colorectal Cancer Family Registry (U01/U24 CA074794) and the University of Hawaii Colorectal Cancer Family Registry (U01/U24 CA074806).DACHS: German Research Council (Deutsche Forschungsgemeinschaft, BR 1704/6-1, BR 1704/6-3, BR 1704/6-4 and CH 117/1-1), and the German Federal Ministry of Education and Research (01KH0404 and 01ER0814).DALS: National Institutes of Health (R01 CA48998 and CA61757 to M.L.S.);OFCCR: National Institutes of Health, through funding allocated to the Ontario Registry for Studies of Familial Colorectal Cancer (U01 CA074783); see CCFR section. Additional funding toward genetic analyses of OFCCR includes the Ontario Research Fund, the Canadian Institutes of Health Research and the Ontario Institute for Cancer Research, through generous support from the Ontario Ministry of Research and Innovation.PLCO: Intramural Research Program of the Division of Cancer Epidemiology and Genetics and supported by contracts from the Division of Cancer Prevention, National Cancer Institute, NIH, DHHS. Additionally, a subset of control samples were genotyped as part of the Cancer Genetic Markers of Susceptibility (CGEMS) Prostate Cancer GWAS (Yeager,M. et al. (2007) Genome-wide association study of prostate cancer identifies a second risk locus at 8q24. Nat. Genet., 39, 645-649), Colon CGEMS pancreatic cancer scan (PanScan) (Amundadottir, L et al. (2009) Genome-wide association study identifies variants in the ABO locus associated with susceptibility to pancreatic cancer. Nat. Genet., 41, 986-990, and Petersen, G.M. et al. (2010) A genome-wide association study identifies pancreatic cancer susceptibility locion chromosomes 13q22.1, 1q32.1 and 5p15.33. Nat. Genet., 42, 224-228), and the Lung Cancer and Smoking study (Landi,M.T. et al. (2009) A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma. Am. J. Hum. Genet., 85, 679-691). The prostate and PanScan study datasets were accessed with appropriate approval through the dbGaP online resource (http://cgems.cancer.gov/data/) accession numbers phs000207v.1p1 and phs000206.v3.p2, respectively, and the lung datasets were accessed from the dbGaP website (http://www.ncbi.nlm.nih.gov/gap) through accession number phs000093 v2.p2. Funding for the Lung Cancer and Smoking study was provided by National Institutes of Health (NIH), Genes, Environment and Health Initiative (GEI) Z01 CP 010200, NIH U01 HG004446 and NIH GEI U01 HG 004438. For the lung study, the GENEVA Coordinating Center provided assistance with genotype cleaning and general study coordination, and the Johns Hopkins University Center for Inherited Disease Research conducted genotyping.PHS: National Institutes of Health (CA42182).PMH: National Institutes of Health (R01 CA076366 to P.A.N.).VITAL: National Institutes of Health (K05 CA154337).WHI: The WHI program is funded by the National Heart, Lung, and Blood Institute, National Institutes of Health, U.S. Department of Health and Human Services through contracts HHSN268201100046C, HHSN268201100001C, HHSN268201100002C, HHSN268201100003C, HHSN268201100004C and HHSN271201100004C.