Journal article
FunRich: An open access standalone functional enrichment and interaction network analysis tool
M Pathan, S Keerthikumar, CS Ang, L Gangoda, CYJ Quek, NA Williamson, D Mouradov, OM Sieber, RJ Simpson, A Salim, A Bacic, AF Hill, DA Stroud, MT Ryan, JI Agbinya, JM Mariadason, AW Burgess, S Mathivanan
Proteomics | Published : 2015
Abstract
As high-throughput techniques including proteomics become more accessible to individual laboratories, there is an urgent need for a user-friendly bioinformatics analysis system. Here, we describe FunRich, an open access, standalone functional enrichment and network analysis tool. FunRich is designed to be used by biologists with minimal or no support from computational and database experts. Using FunRich, users can perform functional enrichment analysis on background databases that are integrated from heterogeneous genomic and proteomic resources (>1.5 million annotations). Besides default human specific FunRich database, users can download data from the UniProt database, which currently sup..
View full abstractGrants
Awarded by Australian NHMRC fellowship
Awarded by Australian Research Council
Awarded by Australian Research Council DECRA
Awarded by Australian Proteomics Computational Facility (NHMRC)
Funding Acknowledgements
SM is supported by the Australian NH&MRC fellowship (1016599), Australian Research Council Discovery project grant (DP130100535), Australian Research Council DECRA (DE150101777) and Ramaciotti Establishment grant. Part of the work is supported by the Australian Proteomics Computational Facility (NH&MRC Enabling Grant 381413). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.