Danielle Ingle

Prolonged Outbreak of Multidrug-Resistant Shigella sonnei Harboring bla(CTX-M-27) in Victoria, Australia

Danielle J Ingle, Patiyan Andersson, Mary Valcanis, Jessica Barnden, Anders Goncalves da Silva, Kristy A Horan, Torsten Seemann, Marion Easton, Deborah A Williamson, Norelle L Sherry, Benjamin P Howden

Journal article  |  2020  |  Antimicrobial Agents and Chemotherapy

In Australia, cases of shigellosis usually occur in returned travelers from regions of shigellosis endemicity or in men who have s..

Systematic analysis of key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria

Claire Gorrie, Anders Goncalves Da Silva, Danielle Ingle, Charlie Higgs, Torsten Seemann, Timothy Stinear, Deborah Williamson, Jason Kwong, Lindsay Grayson, Norelle Sherry, Benjamin Howden

Journal article  |  2020

ABSTRACT Background Pairwise single nucleotide polymorphisms (SNPs) are a cornerstone for genomic approaches to multidrug-resistan..

GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure

Yu Wan, Ryan R Wick, Justin Zobel, Danielle J Ingle, Michael Inouye, Kathryn E Holt

Journal article  |  2020  |  BMC Genomics

BACKGROUND: Horizontal gene transfer contributes to bacterial evolution through mobilising genes across various taxonomical bounda..

GeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene Associations Controlled for Population Structure

Yu Wan, Ryan Wick, Justin Zobel, Danielle Ingle, Michael Inouye, Kathryn Holt

Journal article  |  2020

Abstract Antimicrobial resistance (AMR) in bacteria has been a global threat to public health for decades. A well-known driving fo..

Developmental changes in bone mechanics from Florida manatees (Trichechus manatus latirostris), obligate swimming mammals

Danielle N Ingle, Marianne E Porter

Journal article  |  2020  |  The Journal of Experimental Biology

GENOMIC ASSESSMENT OF WITHIN-HOST POPULATION VARIATION IN NEISSERIA GONORRHOEAE: IMPLICATIONS FOR GONORRHOEA TRANSMISSION

MM Ashcroft, EPF Chow, DYJ Lee, G Taiaroa, BP Howden, CK Fairley, DA Williamson

Journal article  |  2020  |  SEXUAL HEALTH

Objectives: Mathematical modelling and genomic analyses are powerful methods for investigating the transmission dynamics of Neisse..

Y Extensively Drug-Resistant Shigellosis in Australia among Men Who Have Sex with Men

Deborah Williamson, Danielle Ingle, Benjamin Howden

Journal article  |  2019  |  New England Journal of Medicine

Genomic Analysis of Fluoroquinolone- and Tetracycline-Resistant Campylobacter jejuni Sequence Type 6964 in Humans and Poultry, New Zealand, 2014-2016

Nigel P French, Ji Zhang, Glen P Carter, Anne C Midwinter, Patrick J Biggs, Kristin Dyet, Brent J Gilpin, Danielle J Ingle, Kerry Mulqueen, Lynn E Rogers, David A Wilkinson, Sabrina S Greening, Petra Muellner, Ahmed Fayaz, Deborah A Williamson

Journal article  |  2019  |  Emerging Infectious Diseases

Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia

Danielle J Ingle, Marion Easton, Mary Valcanis, Torsten Seemann, Jason C Kwong, Nicola Stephens, Glen P Carter, Anders Goncalves da Silva, James Adamopoulos, Sarah L Baines, Kathryn E Holt, Eric PF Chow, Christopher K Fairley, Marcus Y Chen, Martyn D Kirk, Benjamin P Howden, Deborah A Williamson

Journal article  |  2019  |  Clinical Infectious Diseases

Background: In urban Australia, the burden of shigellosis is either in returning travellers from shigellosis-endemic regions, or i..

Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era

Deborah A Williamson, Eric PF Chow, Claire L Gorrie, Torsten Seemann, Danielle J Ingle, Nasra Higgins, Marion Easton, George Taiaroa, Yonatan H Grad, Jason C Kwong, Christopher K Fairley, Marcus Y Chen, Benjamin P Howden

Journal article  |  2019  |  Nature Communications