Danielle Ingle

Genomic epidemiology and antimicrobial resistance mechanisms of imported typhoid in Australia.

Danielle J Ingle, Patiyan Andersson, Mary Valcanis, Mathilda Wilmot, Marion Easton, Courtney Lane, Jessica Barden, Anders Gonçalves da Silva, Torsten Seemann, Kristy Horan, Susan A Ballard, Norelle L Sherry, Deborah A Williamson, Benjamin P Howden

Journal article  |  2021  |  Antimicrob Agents Chemother

Typhoid fever is an invasive bacterial disease of humans that disproportionately affects low- and middle-income countries. Antimic..

Development of Phylodynamic Methods for Bacterial Pathogens

Danielle J Ingle, Benjamin P Howden, Sebastian Duchene

Journal article  |  2021  |  TRENDS IN MICROBIOLOGY

Phylodynamic methods have been essential to understand the interplay between the evolution and epidemiology of infectious diseases..

Evolutionary dynamics of multidrug resistant Salmonella enterica serovar 4,[5],12:i:- in Australia

Danielle J Ingle, Rebecca L Ambrose, Sarah L Baines, Sebastian Duchene, Anders Goncalves da Silva, Darren YJ Lee, Miriam Jones, Mary Valcanis, George Taiaroa, Susan A Ballard, Martyn D Kirk, Benjamin P Howden, Jaclyn S Pearson, Deborah A Williamson

Journal article  |  2021  |  NATURE COMMUNICATIONS

Salmonella enterica serovar 4,[5],12:i:- (Salmonella 4,[5],12:i:-) is a monophasic variant of Salmonella Typhimurium that has emer..

Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis

Claire L Gorrie, Anders Gonçalves Da Silva, Danielle J Ingle, Charlie Higgs, Torsten Seemann, Timothy P Stinear, Deborah A Williamson, Jason C Kwong, M Lindsay Grayson, Norelle L Sherry, Benjamin P Howden

Journal article  |  2021  |  The Lancet Microbe

Background Pairwise single nucleotide polymorphisms (SNPs) are a cornerstone of genomic approaches to the inference of transmissio..

Campylobacter jejuni ST50, a pathogen of global importance: A comparative genomic analysis of isolates from Australia, Europe and North America

Rhiannon L Wallace, Danielle M Cribb, Dieter M Bulach, Danielle J Ingle, Katrine G Joensen, Eva Moller Nielsen, Pimlapas Leekitcharoenphon, Kerstin Stingl, Martyn D Kirk

Journal article  |  2021  |  ZOONOSES AND PUBLIC HEALTH

Campylobacter jejuni is the leading cause of bacterial gastroenteritis globally, and infections are often transmitted through cons..

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

Jane Hawkey, Kalani Paranagama, Kate S Baker, Rebecca J Bengtsson, Francois-Xavier Weill, Nicholas R Thomson, Stephen Baker, Louise Cerdeira, Zamin Iqbal, Martin Hunt, Danielle J Ingle, Timothy J Dallman, Claire Jenkins, Deborah A Williamson, Kathryn E Holt

Journal article  |  2021  |  NATURE COMMUNICATIONS

Shigella sonnei is the most common agent of shigellosis in high-income countries, and causes a significant disease burden in low- ..

Re-evaluation of a Neonatal Mouse Model of Infection With Enterotoxigenic Escherichia coli

Carla J Carroll, Dianna M Hocking, Kristy I Azzopardi, Judyta Praszkier, Vicki Bennett-Wood, Kaylani Almeida, Danielle J Ingle, Sarah L Baines, Marija Tauschek, Roy M Robins-Browne

Journal article  |  2021  |  FRONTIERS IN MICROBIOLOGY

Enterotoxigenic E. coli (ETEC) is a common cause of diarrhea in children in low- and middle-income countries, and in travelers to ..

Prolonged Outbreak of Multidrug-Resistant Shigella sonnei Harboring bla(CTX-M-27) in Victoria, Australia

Danielle J Ingle, Patiyan Andersson, Mary Valcanis, Jessica Barnden, Anders Goncalves da Silva, Kristy A Horan, Torsten Seemann, Marion Easton, Deborah A Williamson, Norelle L Sherry, Benjamin P Howden

Journal article  |  2020  |  ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

In Australia, cases of shigellosis usually occur in returned travelers from regions of shigellosis endemicity or in men who have s..

Systematic analysis of key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria

Claire Gorrie, Anders Goncalves Da Silva, Danielle Ingle, Charlie Higgs, Torsten Seemann, Timothy Stinear, Deborah Williamson, Jason Kwong, Lindsay Grayson, Norelle Sherry, Benjamin Howden

Journal article  |  2020

Background: Pairwise single nucleotide polymorphisms (SNPs) are a cornerstone for genomic approaches to multidrug-resistant organ..

GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure

Yu Wan, Ryan R Wick, Justin Zobel, Danielle J Ingle, Michael Inouye, Kathryn E Holt

Journal article  |  2020  |  BMC GENOMICS

BACKGROUND: Horizontal gene transfer contributes to bacterial evolution through mobilising genes across various taxonomical bounda..