Danielle Ingle

The changing epidemiology of shigellosis in Australia, 2001-2019.

Aaliya F Ibrahim, Kathryn Glass, Deborah A Williamson, Benjamin G Polkinghorne, Danielle J Ingle, Rose Wright, Martyn D Kirk

Journal article  |  2023  |  PLoS Negl Trop Dis

Shigellosis is an increasing cause of gastroenteritis in Australia, with prolonged outbreaks reported in remote Aboriginal and Tor..

Genomic Diversity of Campylobacter lari Group Isolates from Europe and Australia in a One Health Context

Michele Gourmelon, Amine M Boukerb, Nesrine Nabi, Sangeeta Banerji, Katrine G Joensen, Joelle Serghine, Alexandre Cormier, Francis Megraud, Philippe Lehours, Thomas Alter, Danielle J Ingle, Martyn D Kirk, Eva M Nielsen

Journal article  |  2022  |  APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Members of the Campylobacter lari group are causative agents of human gastroenteritis and are frequently found in shellfish, marin..

Persistence of Rare Salmonella Typhi Genotypes Susceptible to First-Line Antibiotics in the Remote Islands of Samoa

Michael J Sikorski, Tracy H Hazen, Sachin N Desai, Susana Nimarota-Brown, Siaosi Tupua, Michelle Sialeipata, Savitra Rambocus, Danielle J Ingle, Sebastian Duchene, Susan A Ballard, Mary Valcanis, Sara Zufan, Jianguo Ma, Jason W Sahl, Mailis Maes, Gordon Dougan, Robert E Thomsen, Roy M Robins-Browne, Benjamin P Howden, Take K Naseri, et al.

Journal article  |  2022  |  MBIO

For decades, the remote island nation of Samoa (population ~200,000) has faced endemic typhoid fever despite improvements in water..

Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak in Australia: a genomic epidemiological analysis

Mona L Taouk, George Taiaroa, Shivani Pasricha, Sophie Herman, Eric PF Chow, Francesca Azzatto, Bowen Zhang, Cheryll M Sia, Sebastian Duchene, Alvin Lee, Nasra Higgins, Jacqueline Prestedge, Yi Wei Lee, Nicholas R Thomson, Bianca Graves, Ella Meumann, Manoji Gunathilake, Jane S Hocking, Catriona S Bradshaw, Mathew A Beale, et al.

Journal article  |  2022  |  LANCET MICROBE

BACKGROUND: The incidence of syphilis has increased markedly in the past decade in high-income countries, including Australia. To ..

Whole genome sequence analysis of Salmonella Typhi in Papua New Guinea reveals an established population of genotype 2.1.7 sensitive to antimicrobials

Zoe Anne Dyson, Elisheba Malau, Paul F Horwood, Rebecca Ford, Valentine Siba, Mition Yoannes, William Pomat, Megan Passey, Louise M Judd, Danielle J Ingle, Deborah A Williamson, Gordon Dougan, Andrew R Greenhill, Kathryn E Holt

Journal article  |  2022  |  PLOS NEGLECTED TROPICAL DISEASES

BACKGROUND: Typhoid fever, a systemic infection caused by Salmonella enterica serovar Typhi, remains a considerable public health ..

Genomic diversity of antimicrobial resistance in non-typhoidal Salmonella in Victoria, Australia.

Cheryll M Sia, Sarah L Baines, Mary Valcanis, Darren YJ Lee, Anders Gonçalves da Silva, Susan A Ballard, Marion Easton, Torsten Seemann, Benjamin P Howden, Danielle J Ingle, Deborah A Williamson

Journal article  |  2021  |  Microb Genom

Non-typhoidal Salmonella (NTS) is the second most common cause of foodborne bacterial gastroenteritis in Australia with antimicr..

Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis

Claire L Gorrie, Anders Goncalves Da Silva, Danielle J Ingle, Charlie Higgs, Torsten Seemann, Timothy P Stinear, Deborah A Williamson, Jason C Kwong, M Lindsay Grayson, Norelle L Sherry, Benjamin P Howden

Journal article  |  2021  |  LANCET MICROBE

BACKGROUND: Pairwise single nucleotide polymorphisms (SNPs) are a cornerstone of genomic approaches to the inference of transmissi..

Genomic Epidemiology and Antimicrobial Resistance Mechanisms of Imported Typhoid in Australia

Danielle J Ingle, Patiyan Andersson, Mary Valcanis, Mathilda Wilmot, Marion Easton, Courtney Lane, Jessica Barden, Anders Goncalves da Silva, Torsten Seemann, Kristy Horan, Susan A Ballard, Norelle L Sherry, Deborah A Williamson, Benjamin P Howden

Journal article  |  2021  |  ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Typhoid fever is an invasive bacterial disease of humans that disproportionately affects low- and middle-income countries. Antimic..

Evolutionary dynamics of multidrug resistant Salmonella enterica serovar 4,[5],12:i:- in Australia

Danielle J Ingle, Rebecca L Ambrose, Sarah L Baines, Sebastian Duchene, Anders Goncalves da Silva, Darren YJ Lee, Miriam Jones, Mary Valcanis, George Taiaroa, Susan A Ballard, Martyn D Kirk, Benjamin P Howden, Jaclyn S Pearson, Deborah A Williamson

Journal article  |  2021  |  NATURE COMMUNICATIONS

Salmonella enterica serovar 4,[5],12:i:- (Salmonella 4,[5],12:i:-) is a monophasic variant of Salmonella Typhimurium that has emer..

Development of Phylodynamic Methods for Bacterial Pathogens

Danielle J Ingle, Benjamin P Howden, Sebastian Duchene

Journal article  |  2021  |  TRENDS IN MICROBIOLOGY

Phylodynamic methods have been essential to understand the interplay between the evolution and epidemiology of infectious diseases..