Danielle Ingle

Campylobacter jejuni ST50, a pathogen of global importance: A comparative genomic analysis of isolates from Australia, Europe and North America

Rhiannon L Wallace, Danielle M Cribb, Dieter M Bulach, Danielle J Ingle, Katrine G Joensen, Eva Moller Nielsen, Pimlapas Leekitcharoenphon, Kerstin Stingl, Martyn D Kirk

Journal article  |  2021  |  ZOONOSES AND PUBLIC HEALTH

Campylobacter jejuni is the leading cause of bacterial gastroenteritis globally, and infections are often transmitted through cons..

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

Jane Hawkey, Kalani Paranagama, Kate S Baker, Rebecca J Bengtsson, Francois-Xavier Weill, Nicholas R Thomson, Stephen Baker, Louise Cerdeira, Zamin Iqbal, Martin Hunt, Danielle J Ingle, Timothy J Dallman, Claire Jenkins, Deborah A Williamson, Kathryn E Holt

Journal article  |  2021  |  NATURE COMMUNICATIONS

Shigella sonnei is the most common agent of shigellosis in high-income countries, and causes a significant disease burden in low- ..

Re-evaluation of a Neonatal Mouse Model of Infection With Enterotoxigenic Escherichia coli

Carla J Carroll, Dianna M Hocking, Kristy I Azzopardi, Judyta Praszkier, Vicki Bennett-Wood, Kaylani Almeida, Danielle J Ingle, Sarah L Baines, Marija Tauschek, Roy M Robins-Browne

Journal article  |  2021  |  FRONTIERS IN MICROBIOLOGY

Enterotoxigenic E. coli (ETEC) is a common cause of diarrhea in children in low- and middle-income countries, and in travelers to ..

Development of Phylodynamic Methods for Bacterial Pathogens.

Danielle J Ingle, Benjamin P Howden, Sebastian Duchene

Journal article  |  2021  |  Trends Microbiol

Phylodynamic methods have been essential to understand the interplay between the evolution and epidemiology of infectious diseases..

Prolonged Outbreak of Multidrug-Resistant Shigella sonnei Harboring bla(CTX-M-27) in Victoria, Australia

Danielle J Ingle, Patiyan Andersson, Mary Valcanis, Jessica Barnden, Anders Goncalves da Silva, Kristy A Horan, Torsten Seemann, Marion Easton, Deborah A Williamson, Norelle L Sherry, Benjamin P Howden

Journal article  |  2020  |  ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

In Australia, cases of shigellosis usually occur in returned travelers from regions of shigellosis endemicity or in men who have s..

Systematic analysis of key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria

Claire Gorrie, Anders Goncalves Da Silva, Danielle Ingle, Charlie Higgs, Torsten Seemann, Timothy Stinear, Deborah Williamson, Jason Kwong, Lindsay Grayson, Norelle Sherry, Benjamin Howden

Journal article  |  2020

ABSTRACT Background Pairwise single nucleotide polymorphisms (SNPs) are a cornerstone for genomic approaches to multidrug-resistan..

GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure

Yu Wan, Ryan R Wick, Justin Zobel, Danielle J Ingle, Michael Inouye, Kathryn E Holt

Journal article  |  2020  |  BMC GENOMICS

BACKGROUND: Horizontal gene transfer contributes to bacterial evolution through mobilising genes across various taxonomical bounda..

GeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene Associations Controlled for Population Structure

Yu Wan, Ryan Wick, Justin Zobel, Danielle Ingle, Michael Inouye, Kathryn Holt

Journal article  |  2020

Antimicrobial resistance (AMR) in bacteria has been a global threat to public health for decades. A well-known driving force for t..

GENOMIC ASSESSMENT OF WITHIN-HOST POPULATION VARIATION IN NEISSERIA GONORRHOEAE: IMPLICATIONS FOR GONORRHOEA TRANSMISSION

MM Ashcroft, EPF Chow, DYJ Lee, G Taiaroa, BP Howden, CK Fairley, DA Williamson

Journal article  |  2020  |  SEXUAL HEALTH

ABSTRACT Objectives Mathematical modelling and genomic analyses are powerful methods for investigating the transmission dynamics o..

Y Extensively Drug-Resistant Shigellosis in Australia among Men Who Have Sex with Men

Deborah Williamson, Danielle Ingle, Benjamin Howden

Journal article  |  2019  |  NEW ENGLAND JOURNAL OF MEDICINE