Heejung Shim

BayesCAT: Bayesian co-estimation of alignment and tree

Heejung Shim, Bret Larget

Journal article  |  2018  |  Biometrics

Promoter shape varies across populations and affects promoter evolution and expression noise

Ignacio E Schor, Jacob F Degner, Dermot Harnett, Enrico Cannavo, Francesco P Casale, Heejung Shim, David A Garfield, Ewan Birney, Matthew Stephens, Oliver Stegle, Eileen EM Furlong

Journal article  |  2017  |  Nature Genetics

Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling

Anil Raj, Sidney H Wang, Heejung Shim, Arbel Harpak, Yang I Li, Brett Engelmann, Matthew Stephens, Yoav Gilad, Jonathan K Ptitchard

Journal article  |  2016  |  eLife

Accurate annotation of protein coding regions is essential for understanding how genetic information is translated into function. ..

msCentipede: Modeling Heterogeneity across Genomic Sites and Replicates Improves Accuracy in the Inference of Transcription Factor Binding

Anil Raj, Heejung Shim, Yoav Gilad, Jonathan K Pritchard, Matthew Stephens

Journal article  |  2015  |  PLoS One

WAVELET-BASED GENETIC ASSOCIATION ANALYSIS OF FUNCTIONAL PHENOTYPES ARISING FROM HIGH-THROUGHPUT SEQUENCING ASSAYS

Heejung Shim, Matthew Stephens

Journal article  |  2015  |  The Annals of Applied Statistics

A Multivariate Genome-Wide Association Analysis of 10 LDL Subfractions, and Their Response to Statin Treatment, in 1868 Caucasians

Heejung Shim, Daniel I Chasman, Joshua D Smith, Samia Mora, Paul M Ridker, Deborah A Nickerson, Ronald M Krauss, Matthew Stephens

Journal article  |  2015  |  PLoS One

A statin-dependent QTL for GATM expression is associated with statin-induced myopathy

Lara M Mangravite, Barbara E Engelhardt, Marisa W Medina, Joshua D Smith, Christopher D Brown, Daniel I Chasman, Brigham H Mecham, Bryan Howie, Heejung Shim, Devesh Naidoo, QiPing Feng, Mark J Rieder, Yii-Der I Chen, Jerome I Rotter, Paul M Ridker, Jemma C Hopewell, Sarah Parish, Jane Armitage, Rory Collins, Russell A Wilke, et al.

Journal article  |  2013  |  Nature

Genome-wide association studies using single-nucleotide polymorphisms versus haplotypes: an empirical comparison with data from the North American Rheumatoid Arthritis Consortium.

Heejung Shim, Hyonho Chun, Corinne D Engelman, Bret A Payseur

Journal article  |  2009  |  BMC Proceedings

The high genomic density of the single-nucleotide polymorphism (SNP) sets that are typically surveyed in genome-wide association s..

Integrating quantitative information from ChIP-chip experiments into motif finding

Heejung Shim, Sunduz Keles

Journal article  |  2008  |  Biostatistics

circuitSNPs: Predicting genetic effects using a Neural Network to model regulatory modules of DNase-seq footprints

Alexander G Shanku, Anthony Findley, Cynthia Kalita, Heejung Shim, Francesca Luca, Roger Pique-Regi

Journal article

AbstractMotivationIdentifying and characterizing the function of non coding regions in the genome, and the genetic variants disrup..